PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008225757.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family NAC
Protein Properties Length: 238aa    MW: 27752.4 Da    PI: 9.8634
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008225757.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM48.13.7e-15101394128
             NAM   4 GfrFhPtdeelvveyLkkkvegkk...leleevikevdiykv.ePwdLpkkvka...eekewyfFskrdkkyatgkrknr.atksgyWkatgkdk 90 
                      frF+Ptd+e++   L k v +++    + + ++++ d++ + ePw++ + + +    ++++yf ++ ++ + + +r++r +  +g W+   + k
  XP_008225757.1  10 AFRFQPTDQEIIRSILYKMVVEREplnPSYKGIVHDEDLFGTkEPWKIWEDYGGdqlYDQDLYFLCQLKRLNFSRSRTHRkVGCEGSWRGVVS-K 103
                     69*****************988887865556679999*998779****75333322255689******************5556*****8766.8 PP

             NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                      v++ + + +g  + L + +   ++ ++  W ++ey+l
  XP_008225757.1 104 LVYDGNANPIGRIRKLRYKN--PKSEHHGGWYLDEYSL 139
                     899989999*********84..4444599*******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.16E-166162IPR003441NAC domain
PROSITE profilePS5100520.7857163IPR003441NAC domain
PfamPF023651.0E-1010139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MANSRHVSLA FRFQPTDQEI IRSILYKMVV EREPLNPSYK GIVHDEDLFG TKEPWKIWED  60
YGGDQLYDQD LYFLCQLKRL NFSRSRTHRK VGCEGSWRGV VSKLVYDGNA NPIGRIRKLR  120
YKNPKSEHHG GWYLDEYSLF VGDDGHDQTT PGINFVICRL RKNHRSGRIR AGVDKKTNKA  180
PQQIHENESK RKSMNVIINI DDEEVPHGCS KNARTRESFR KRGSFFSPEF LSFPTALF
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008225757.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008225757.11e-180PREDICTED: uncharacterized protein LOC103325369
TrEMBLA0A314XGT81e-168A0A314XGT8_PRUYE; Uncharacterized protein
STRINGXP_008225757.11e-179(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12591634
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18270.29e-08Arabidopsis NAC domain containing protein 87