PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008225840.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MIKC_MADS
Protein Properties Length: 255aa    MW: 29753.5 Da    PI: 6.7444
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008225840.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF79.52.3e-25959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    +rien + rqvtf+kRr+g++KK +ELSvLCda++ ++ifsstgk++ y+s
  XP_008225840.1  9 SRIENRTTRQVTFAKRRAGLIKKTHELSVLCDAQIGLVIFSSTGKMFQYCS 59
                    59***********************************************96 PP
2K-box66.59.1e-2376167696
           K-box   6 gks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 
                     g++  +++++e+++ el+k+++e+++L+ ++ ++ GedL+   +++L +Le+qLe+s++++R++K e+l +qi++l+   k+ +een++L +
  XP_008225840.1  76 GTRiFQHNDTEYMNAELRKMRRETHSLELSLQRYTGEDLSCVRFEDLVELEHQLEESVNRVRARKFEVLQQQIDNLRATTKRREEENEQLFH 167
                     555567899********************************************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.801161IPR002100Transcription factor, MADS-box
SMARTSM004322.3E-37160IPR002100Transcription factor, MADS-box
CDDcd002652.86E-38272No hitNo description
SuperFamilySSF554551.57E-29283IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004047.2E-27323IPR002100Transcription factor, MADS-box
PfamPF003192.9E-231057IPR002100Transcription factor, MADS-box
PRINTSPR004047.2E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004047.2E-273859IPR002100Transcription factor, MADS-box
PfamPF014863.2E-2081167IPR002487Transcription factor, K-box
PROSITE profilePS5129714.20185177IPR002487Transcription factor, K-box
Gene3DG3DSA:1.20.120.1608.8E-489162IPR008207Signal transduction histidine kinase, phosphotransfer (Hpt) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008360Biological Processregulation of cell shape
GO:0019252Biological Processstarch biosynthetic process
GO:0043068Biological Processpositive regulation of programmed cell death
GO:0048316Biological Processseed development
GO:0048481Biological Processplant ovule development
GO:0080155Biological Processregulation of double fertilization forming a zygote and endosperm
GO:2000029Biological Processregulation of proanthocyanidin biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0004871Molecular Functionsignal transducer activity
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MGRGKITISR IENRTTRQVT FAKRRAGLIK KTHELSVLCD AQIGLVIFSS TGKMFQYCSE  60
SSSMEELIQR YQVARGTRIF QHNDTEYMNA ELRKMRRETH SLELSLQRYT GEDLSCVRFE  120
DLVELEHQLE ESVNRVRARK FEVLQQQIDN LRATTKRREE ENEQLFHLIQ IKAHQDAAFG  180
HEQAHEAEQV ENLQILPKSE EHRHVLDQFP FGGEEQPSSV LKLAMPQTQF NPYSLQPPHQ  240
PSLLDFNLSG RSIYE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A4e-20171169MEF2C
5f28_B4e-20171169MEF2C
5f28_C4e-20171169MEF2C
5f28_D4e-20171169MEF2C
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008225840.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008225840.10.0PREDICTED: MADS-box protein FBP24 isoform X1
RefseqXP_008225841.10.0PREDICTED: MADS-box protein FBP24 isoform X1
RefseqXP_016648485.10.0PREDICTED: MADS-box protein FBP24 isoform X1
TrEMBLA0A314Z0K60.0A0A314Z0K6_PRUYE; Uncharacterized protein
STRINGXP_008225840.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49352952
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23260.29e-54MIKC_MADS family protein