PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008226043.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB
Protein Properties Length: 338aa    MW: 38049.7 Da    PI: 7.5962
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008226043.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.91.7e-161360148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg W++eEde+l++ ++  G g+W++++++ g+ R++k+c++rw +yl
   XP_008226043.1 13 RGLWSPEEDEKLIKHITTRGHGSWSSVPKHAGLQRCGKSCRLRWINYL 60
                     788*******************************************97 PP
2Myb_DNA-binding57.53e-1866109146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg++T+eE+++++d+++ lG++ W+ Ia++++ gRt++++k++w++
   XP_008226043.1  66 RGSFTPEEEQIIIDVHRILGNR-WAQIAKHLP-GRTDNEVKNFWNS 109
                      89********************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.0E-25563IPR009057Homeodomain-like
PROSITE profilePS5129417.527860IPR017930Myb domain
SuperFamilySSF466892.13E-2910107IPR009057Homeodomain-like
SMARTSM007174.3E-111262IPR001005SANT/Myb domain
PfamPF002492.1E-141360IPR001005SANT/Myb domain
CDDcd001671.01E-91660No hitNo description
PROSITE profilePS5129427.36961115IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.7E-2664115IPR009057Homeodomain-like
SMARTSM007174.1E-1765113IPR001005SANT/Myb domain
PfamPF002491.4E-1666109IPR001005SANT/Myb domain
CDDcd001671.48E-1268108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MGHRCCGKQK VKRGLWSPEE DEKLIKHITT RGHGSWSSVP KHAGLQRCGK SCRLRWINYL  60
RPELKRGSFT PEEEQIIIDV HRILGNRWAQ IAKHLPGRTD NEVKNFWNSC IKKKLMSQGL  120
DPKTHNLISS HQRSSNKIGG SIRSQPHDQQ KPISVNFTTV NSQKKNCSAE LNSSSSPIVT  180
LYNAQQPPMV QTMATPPTYQ YHDDQNPNAA WTSAKDPTFH EPSAESTLNI SSSSSSSSMN  240
LSVFGLWDNS NCLYASAQPI EAPRILLEGE QSKGSEEVLQ QEKEKLLEME MFKAIDQDMD  300
ASLMESTSFD FSFLESTLMS TGVTSHDLNS MADFAWNY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-31131157108B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00350DAPTransfer from AT3G12720Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008226043.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008226043.10.0PREDICTED: transcription factor MYB3-like
TrEMBLA0A251PL710.0A0A251PL71_PRUPE; Uncharacterized protein
STRINGXP_008226043.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF34663267
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12720.14e-87myb domain protein 67