PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008226055.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family TALE
Protein Properties Length: 814aa    MW: 89164.9 Da    PI: 7.6028
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008226055.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.52.6e-096286651954
                     HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     Fe   ++yp+ +++  LA+++gL+ +qV++WF N R +
  XP_008226055.1 628 FEHflHPYPTDTDKHMLATQTGLSRNQVSNWFINARVR 665
                     664459******************************87 PP
2BELL111.54.7e-36477545472
            BELL   4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                     e q+kkakLl ++eeV++rYkqy++q+q+v+ssFe vagl sa+pY+s+Al+++SrhFrcL +ai++q+
  XP_008226055.1 477 EYQQKKAKLLYMQEEVCRRYKQYHQQMQMVVSSFESVAGLSSATPYISMALNTVSRHFRCLTNAIKDQL 545
                     789***************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005748.9E-44376543IPR006563POX domain
PfamPF075262.2E-42381541IPR006563POX domain
PROSITE profilePS5007111.92606669IPR001356Homeobox domain
SMARTSM003894.1E-8609673IPR001356Homeobox domain
CDDcd000863.35E-11609670No hitNo description
SuperFamilySSF466899.41E-17611676IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.2E-27612673IPR009057Homeodomain-like
PfamPF059203.8E-18626665IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010223Biological Processsecondary shoot formation
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010229Biological Processinflorescence development
GO:0048645Biological Processorgan formation
GO:0080006Biological Processinternode patterning
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 814 aa     Download sequence    Send to blast
MEMSGFRPEL HVAQQSRRDK LRVHQTSSPP PHLDSEKLPL HPGLNPDIVQ VRNVRNANLL  60
YDPTVFSSEM LNFSINTNAL SGQGSGESEN FGNWRSLNPP QSLDWVTNYT SGSVGSGSNN  120
QNHMFGSREA NNNMSPSTPH LLKPSSFHGY QDVQSSLANQ SAEISSHHVS QKHLGTMHFS  180
SPPLNYLNTL QDVVTSASTG GQDQLEMASL VQQRIMENEL VLLPSYVNQS NTLRFDNASS  240
NSWMNRQPVE NRHHWSSGGG GGMGFSTAKN VDEDMRNGMS NDSNQQGLSL SLSSNPPSNN  300
KLPAAQFGSQ DLHASSHDDR AFKDVQSPKA GKSSADYLCS ITKPSIISKA CGKSLQDIVG  360
TSTSASRSTG PLGPFTGYAT ILKSSKFLKP AQQLLDEFCR NSDSKLTKTR EASERMSGDV  420
SASASVSVST DAANAVETEA VAKGNNSGAS SSTFYGSNEI TSDGGAASIS SGSFGPEYQQ  480
KKAKLLYMQE EVCRRYKQYH QQMQMVVSSF ESVAGLSSAT PYISMALNTV SRHFRCLTNA  540
IKDQLKHIRK ALGEEYLSSA ITTGTTGCSS SKGDKNLAKL KFMGLGFQKH NKSGGGAHLG  600
FSEPQQHVWR PQRGLPERSV AILRAWLFEH FLHPYPTDTD KHMLATQTGL SRNQVSNWFI  660
NARVRVWKPM VEEIHMLETR GGSVEANQDP TKKDGNSLTE GTSSRPDNEH QLGINNMMHD  720
RQLECSGDEE QQYQEIKRSR MECQVPSSMD GGLMGFVPYQ RSGLEVGGLG AVSLTLGLRH  780
GVESAQQQQQ QQLQQQEDQL RRQLGSQMIR DFVG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A3e-15615673563Homeobox protein Meis2
3k2a_B3e-15615673563Homeobox protein Meis2
4xrs_A2e-15615672158Homeobox protein Meis1
4xrs_B2e-15615672158Homeobox protein Meis1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008226055.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008226055.10.0PREDICTED: BEL1-like homeodomain protein 9
TrEMBLM5W2N40.0M5W2N4_PRUPE; Uncharacterized protein
STRINGXP_008226055.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF34813257
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27990.13e-90BEL1-like homeodomain 8