PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008226083.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB_related
Protein Properties Length: 544aa    MW: 62268.9 Da    PI: 8.7551
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008226083.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.61.3e-08358406348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      +WT  E  +l+++v q G g+W++  r +     +Rt+ ++k++w+++l
   XP_008226083.1 358 SWTSSEVMKLIEGVSQCGVGRWSAMKRLLFsscSHRTAVDIKDKWRNLL 406
                      6***********************888887*****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.187351410IPR017930Myb domain
SMARTSM007171.5E-9355408IPR001005SANT/Myb domain
PfamPF002496.1E-7358406IPR001005SANT/Myb domain
SuperFamilySSF466891.64E-14358412IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.5E-12358407IPR009057Homeodomain-like
CDDcd116604.43E-17359407No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 544 aa     Download sequence    Send to blast
MFQGTDNAVC HGRISLPTCQ EYLWEAKHSD KVFKSEGGPD SCLQNAGLES HSPGVYEEYC  60
GAEMSDLSCE STPRLGYKDN CSSLLLDHMS VQERQLDFRN MFRYETPVID KQWPKHSISP  120
GLQNFFELES GSNLAECGLM TKKNEGKTVL SSSIEFFGKD TGTIKGSLSD EGMSGDLQVK  180
WKKLADLESL KTSNSRVCEI ELCSSDERDK AGAFAMQKRS RRPPRRYIEE LAESKSKFYI  240
RKCGVACKRS KNSFLHVRSD KNNRQKETQE ETLLCQDKSY EVGCIQVPFG LPMEAGQLEE  300
HNSSLNSEDC KDHRLLRSSE KLEIEYSPAK SREEISDDEC VLRRSTQKGS KQIKHYTSWT  360
SSEVMKLIEG VSQCGVGRWS AMKRLLFSSC SHRTAVDIKD KWRNLLKASC TQLQKERKIK  420
RDISKQASDH VPESVLQRVR ELAVIYPYPR RKRIFSKIPR YRDRAGQLQC LESTFSIQGI  480
CCNNIKREIS KRASDHVPES VSQRVRELAV IYPYPRRQKV RSLLMQCLRF QPPRVMHGPI  540
LNCC
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008226083.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008226083.10.0PREDICTED: uncharacterized protein LOC103325679 isoform X1
TrEMBLA0A251NNH10.0A0A251NNH1_PRUPE; Uncharacterized protein
STRINGXP_008226083.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF150181313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.15e-28TRF-like 6