PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008226183.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB
Protein Properties Length: 365aa    MW: 41185.6 Da    PI: 4.6171
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008226183.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.15.4e-151663148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W++ Ed++l+  +++ G ++W++ ++  g+ R++k+c++rw +yl
   XP_008226183.1 16 RGPWSPAEDLRLITFIQKNGHDNWRALPKQAGLLRCGKSCRLRWINYL 63
                     89******************************99************97 PP
2Myb_DNA-binding476e-1569114148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T eE++ ++++++ +G++ W++Ia+ ++ gRt++++k+ w+++l
   XP_008226183.1  69 RGNFTREEEDSIIRLHEAWGNK-WSKIASQFP-GRTDNEIKNVWNTHL 114
                      89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-22766IPR009057Homeodomain-like
PROSITE profilePS5129414.661163IPR017930Myb domain
SuperFamilySSF466891.83E-2814110IPR009057Homeodomain-like
SMARTSM007178.4E-121565IPR001005SANT/Myb domain
PfamPF002494.4E-141663IPR001005SANT/Myb domain
CDDcd001671.21E-81863No hitNo description
PROSITE profilePS5129424.55464118IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.4E-2667118IPR009057Homeodomain-like
SMARTSM007171.4E-1368116IPR001005SANT/Myb domain
PfamPF002496.1E-1469114IPR001005SANT/Myb domain
CDDcd001671.87E-971114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MGKGRTPCCD KNKVKRGPWS PAEDLRLITF IQKNGHDNWR ALPKQAGLLR CGKSCRLRWI  60
NYLRPDLKRG NFTREEEDSI IRLHEAWGNK WSKIASQFPG RTDNEIKNVW NTHLKKKLGF  120
KNSEFCGDES KELSSITSSS SSSSSSASFL SGGKPSVAGE LEHQSADQET SMANNNPHHD  180
PCILTIPEEL DLDSPMELIN QFRPDPKDLK ELTSSSVSSI ESNGSSSSQL DISRPSEEQM  240
DFLFDFSEPN YDIPLEPDSD FWNTFDGFVP LQSNEVQLNQ AEACKSSNYG QHENEKWLSY  300
LESELGLDQP TADCTGQEFL AQVTTGQLLP ETFLCDKMPN PAAEFDQSLD YFQMWPFLPH  360
NNSSI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C1e-24161184105C-Myb DNA-Binding Domain
1msf_C1e-24161184105C-Myb DNA-Binding Domain
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00249DAPTransfer from AT1G79180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008226183.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008226183.10.0PREDICTED: myb-related protein Zm1
TrEMBLA0A314UN790.0A0A314UN79_PRUYE; Myb-related protein Zm1
STRINGXP_008226183.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100293042
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16490.13e-72myb domain protein 58