PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008226425.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family HD-ZIP
Protein Properties Length: 171aa    MW: 19907.6 Da    PI: 7.7386
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008226425.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox54.22.4e-171769456
                    -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                    + ++t+eq++ Le+ F +++++  e++  LAk+lg++ rqV +W+qN+Ra++k
  XP_008226425.1 17 KKRLTQEQVNLLERNFTSDNKLEPERKLLLAKQLGIPPRQVAIWYQNKRARWK 69
                    5679************************************************9 PP
2HD-ZIP_I/II111.17.5e-3616107293
     HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                     +k+rl++eqv+lLE++F++++kLeperK  la++Lg+ prqva+W+qn+RAR+kt+ lE dy+a+++++++  +e++rLek+ve+Lr elk+
  XP_008226425.1  16 NKKRLTQEQVNLLERNFTSDNKLEPERKLLLAKQLGIPPRQVAIWYQNKRARWKTQSLELDYNAIQAKLETALAEKRRLEKDVERLRGELKK 107
                     79**************************************************************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.5321171IPR001356Homeobox domain
SMARTSM003891.5E-121475IPR001356Homeobox domain
SuperFamilySSF466897.7E-171780IPR009057Homeodomain-like
CDDcd000864.55E-121772No hitNo description
Gene3DG3DSA:1.10.10.602.8E-181778IPR009057Homeodomain-like
PfamPF000469.7E-151769IPR001356Homeobox domain
PROSITE patternPS0002704669IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009637Biological Processresponse to blue light
GO:0009646Biological Processresponse to absence of light
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MEFFHTPNHK HSFQHNKKRL TQEQVNLLER NFTSDNKLEP ERKLLLAKQL GIPPRQVAIW  60
YQNKRARWKT QSLELDYNAI QAKLETALAE KRRLEKDVER LRGELKKAHD LVLVLNQTQE  120
LPAHPVICSM FNSSSAEEGV GSSSLQQHED QVSDHEVKQL EELYACLIGM Q
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008226425.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008226425.11e-125PREDICTED: homeobox-leucine zipper protein ATHB-52
TrEMBLA0A314ZC891e-120A0A314ZC89_PRUYE; Homeobox-leucine zipper protein ATHB-52
STRINGXP_008226425.11e-124(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110112239
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53980.11e-33homeobox protein 52