PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008226604.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family B3
Protein Properties Length: 258aa    MW: 28947.4 Da    PI: 9.8083
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008226604.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.57.5e-16271021596
                     -EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
              B3  15 rlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                     +l lp  f+ +++g++++  +  l+ ++g+ W+v l  + + +++++ +GW +F  ++ Lk+g f+vF ++g s+f   v++
  XP_008226604.1  27 QLFLPPAFTVHYNGPSHC--KCALRGPTGKWWTVGL--EEREDGFYFHEGWPRFMTDHSLKVGYFLVFDHQGGSKF--DVTI 102
                     699*********999666..7***************..*******************************9998888..4444 PP
2B344.33.1e-141542391399
                     TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE.....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
              B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliy...rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                     + r+ +pk+ a + g++  ++  ++l+d++grsW+vkl+    + ++gr ++++G     +an++  gD++vF+l++rse    v++fr+
  XP_008226604.1 154 QYRMNIPKELAVAEGLI--GKERVMLKDPNGRSWNVKLRLdakEHHGGRLLMAQGLVACWQANNISLGDTIVFELVKRSEM--EVHIFRT 239
                     56899******999888..4557***************99776777777*************************9986555..9999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.14E-219108IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.9E-219108IPR015300DNA-binding pseudobarrel domain
CDDcd100172.27E-1713103No hitNo description
SMARTSM010194.8E-915106IPR003340B3 DNA binding domain
PfamPF023621.1E-1227101IPR003340B3 DNA binding domain
PROSITE profilePS5086311.03928106IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.2E-16139238IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.02E-15140239IPR015300DNA-binding pseudobarrel domain
CDDcd100177.53E-12144238No hitNo description
SMARTSM010193.3E-8146240IPR003340B3 DNA binding domain
PfamPF023622.7E-11155239IPR003340B3 DNA binding domain
PROSITE profilePS5086310.644156240IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MARKPTKRSP KLPSFFKVLL GDDFPWQLFL PPAFTVHYNG PSHCKCALRG PTGKWWTVGL  60
EEREDGFYFH EGWPRFMTDH SLKVGYFLVF DHQGGSKFDV TIYHPMGCDM RSMGNSVRPG  120
KRPATAAAVE ETSTGSIVFR SEHPCFIGIL GKNQYRMNIP KELAVAEGLI GKERVMLKDP  180
NGRSWNVKLR LDAKEHHGGR LLMAQGLVAC WQANNISLGD TIVFELVKRS EMEVHIFRTG  240
AGGNMRSVVL DASSSVKH
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008226604.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008226604.10.0PREDICTED: B3 domain-containing protein REM5-like
TrEMBLA0A251PM681e-175A0A251PM68_PRUPE; Uncharacterized protein
STRINGXP_008226604.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71851546
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31640.12e-20B3 family protein