PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008226723.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB
Protein Properties Length: 349aa    MW: 39213.1 Da    PI: 8.7568
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008226723.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding61.81.5e-191461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT+eEd++l+d+++++G g+W+t ++  g++R++k+c++rw +yl
   XP_008226723.1 14 RGPWTPEEDKKLIDYIQKHGHGRWRTLPKNAGLKRCGKSCRLRWANYL 61
                     89********************************************97 PP
2Myb_DNA-binding54.62.5e-1767111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rgr++ eE+e++++++  lG++ W++Ia++++ gRt++++k++w+++
   XP_008226723.1  67 RGRFSFEEEEIIIQLHSVLGNK-WSAIASRLP-GRTDNEIKNYWNTH 111
                      89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.7E-27564IPR009057Homeodomain-like
PROSITE profilePS5129418.625961IPR017930Myb domain
SuperFamilySSF466891.05E-3111108IPR009057Homeodomain-like
SMARTSM007171.1E-151363IPR001005SANT/Myb domain
PfamPF002491.2E-171461IPR001005SANT/Myb domain
CDDcd001673.75E-131661No hitNo description
PROSITE profilePS5129425.54562116IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.1E-2665116IPR009057Homeodomain-like
SMARTSM007179.9E-1766114IPR001005SANT/Myb domain
PfamPF002491.8E-1567111IPR001005SANT/Myb domain
CDDcd001671.33E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MGKIPCCDKN GLKRGPWTPE EDKKLIDYIQ KHGHGRWRTL PKNAGLKRCG KSCRLRWANY  60
LRPDIKRGRF SFEEEEIIIQ LHSVLGNKWS AIASRLPGRT DNEIKNYWNT HIRKRLLRMG  120
IDPVTHTPRL DLLELSSAIC STLYNSSSPH NPQLNVPNLL GIGPIMDPDL LNLATTFLSC  180
QQNQTGFSQI NQTQFQSQST QPSQIQNPVQ EIQSCTTSNT LNVPFLSYPG SSNVAGQGFV  240
PTTNQLGSYD SKYESMISHI PHQNYNQPCT SNNVNQYQNF QNMSSFGSVL SSTPSSSPAT  300
TLNSSPAITY INSSTEDERD SFCSNILMYH DIPNALNATK LLYQKNIIN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-32121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in osmotic stress and wounding signaling pathways (Probable). Contributes to basal resistance against the herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:19517001, ECO:0000305|PubMed:12857823}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008226723.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by light (PubMed:8980549). Induced by wounding, salt stress and abscisic acid (PubMed:12857823). Induced by the lepidopteran herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:12857823, ECO:0000269|PubMed:19517001, ECO:0000269|PubMed:8980549}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008226723.10.0PREDICTED: transcription factor MYB34
SwissprotQ9LDR81e-102MY102_ARATH; Transcription factor MYB102
TrEMBLM5WK280.0M5WK28_PRUPE; Uncharacterized protein
STRINGXP_008226723.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF85034127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21440.11e-100MYB-like 102
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]
  4. Zhu L,Guo J,Ma Z,Wang J,Zhou C
    Arabidopsis Transcription Factor MYB102 Increases Plant Susceptibility to Aphids by Substantial Activation of Ethylene Biosynthesis.
    Biomolecules, 2019.
    [PMID:29880735]