PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008226841.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family B3
Protein Properties Length: 162aa    MW: 18213.3 Da    PI: 9.709
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008226841.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B333.48e-11661431698
                     EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3  16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                     +++ +k a + g+       ++l+d++grsW v+l+   + +r  ++ GW e  k n++  gD+++F+l++  ++ + +++fr
  XP_008226841.1  66 VTIQNKLAVAEGLMR--RDAVMLQDPTGRSWLVELR-VECVNRLDMAIGWTECRKVNQISPGDSIIFELVK--QGVMQIHIFR 143
                     566666666666553..337***************5.45556688999********************976..6777999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.3E-1546143IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.9E-1346143IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.003753145IPR003340B3 DNA binding domain
PfamPF023621.8E-868144IPR003340B3 DNA binding domain
CDDcd100172.94E-884143No hitNo description
PROSITE profilePS5086310.78584145IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MKLLSLTLKT ENKTIDSDRR SCKYPISEKR PVSFCVQETS TGSILFKSEN PCFLVCSRKQ  60
HLLYRVTIQN KLAVAEGLMR RDAVMLQDPT GRSWLVELRV ECVNRLDMAI GWTECRKVNQ  120
ISPGDSIIFE LVKQGVMQIH IFRGAVGGNS LSVITAAPNV KN
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008226841.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008226841.11e-118PREDICTED: B3 domain-containing protein Os01g0723500-like
TrEMBLA0A314Z0G51e-101A0A314Z0G5_PRUYE; Putative B3 domain-containing protein
TrEMBLM5X2H21e-101M5X2H2_PRUPE; Uncharacterized protein
STRINGXP_008226841.11e-117(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71851546
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.16e-08B3 family protein