PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008226954.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB
Protein Properties Length: 543aa    MW: 60003.6 Da    PI: 6.8633
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008226954.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.51.3e-173885148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+ Ed+ l ++v+++G g+W+++ r  g++R++k+c++rw ++l
   XP_008226954.1 38 KGPWTAAEDQTLMEYVRKHGEGNWNAVQRNSGLNRCGKSCRLRWANHL 85
                     79******************************************9986 PP
2Myb_DNA-binding50.45.1e-1691134146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g +++eE+ +++++++++G++ W++ a+ ++ gRt++++k++w++
   XP_008226954.1  91 KGVFSPEEERRILELHAKYGNK-WARMASQLP-GRTDNEIKNYWNT 134
                      789*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.8623385IPR017930Myb domain
SuperFamilySSF466896.47E-3135132IPR009057Homeodomain-like
SMARTSM007176.3E-153787IPR001005SANT/Myb domain
PfamPF002496.8E-163885IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-233992IPR009057Homeodomain-like
CDDcd001674.15E-114085No hitNo description
PROSITE profilePS5129425.44986140IPR017930Myb domain
SMARTSM007171.7E-1690138IPR001005SANT/Myb domain
PfamPF002495.0E-1591134IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.5E-2593139IPR009057Homeodomain-like
CDDcd001675.20E-1294134No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 543 aa     Download sequence    Send to blast
MTTNNGSIWE LHREGMLPLD SGGGGGGHVV EGSDGLKKGP WTAAEDQTLM EYVRKHGEGN  60
WNAVQRNSGL NRCGKSCRLR WANHLRPNLK KGVFSPEEER RILELHAKYG NKWARMASQL  120
PGRTDNEIKN YWNTRVKRRQ RQCLPLYPHD IKQSHSQATS LTIPSLTPLT TTIQNPFQPI  180
TNGSTPTFSF QTQTQSPTQS HHLPPLSPPP SLSPLSSPHE TKPTTLTSFP PFDPINIITS  240
SFSPSSTPSF TFHRPAPILG APLCHKRYRD SIVFSPPRFP NLKRNTSMFR TRSMPDIASF  300
QLTGSNSMPA IASLTRTYSM SDNPSFDFPM TFDHSFPPLP RSQFDFSDNF LSPAGSVYSV  360
QSELPSNQVS QTQLQISIDN NLSSVAGATL AAAAEETHSR SGLLDDLLQE ADALEAYGGG  420
NNSRTTNGIL GSSEEKHVLD GYDQWLQSTS SVDGHLNSMH KDFSKLFGSI PSSESVSDWY  480
SDSGEVSNAH SSGITDVSLD MQQMASMFPT DATAEHGRAS SFREEEQLSY HMDMNKVLMT  540
QYS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-31321391107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008226954.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008226954.10.0PREDICTED: transcription factor MYB76-like
TrEMBLA0A251PSA40.0A0A251PSA4_PRUPE; Uncharacterized protein
STRINGXP_008226954.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32460.27e-67myb domain protein 101