PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008227616.2
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family FAR1
Protein Properties Length: 494aa    MW: 56841.9 Da    PI: 9.6325
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008227616.2genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR170.44.3e-2242130190
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                     +fYn+YA  +GF +r ++s  +k+++ei +++fvC k+g  ++++++  +++r+r  +r++Ckak++v k++ ++k+ ++ + + HnH+++
  XP_008227616.2  42 NFYNRYAFLAGFGIRLHSSFWRKNKKEILRKEFVCCKQGAYRKDETR--ERKRQRGISRCNCKAKIVVMKTHgSKKYTISLFAEGHNHKVT 130
                     6**************************************99998877..9999*******************9***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031018.0E-2042131IPR004330FAR1 DNA binding domain
PfamPF105513.6E-34251344IPR018289MULE transposase domain
PfamPF105366.2E-13395487IPR019557Aminotransferase-like, plant mobile domain
Sequence ? help Back to Top
Protein Sequence    Length: 494 aa     Download sequence    Send to blast
MSGGSESDDS VTANGRVYIP EVRNEETPAV GMKFDSLDLV YNFYNRYAFL AGFGIRLHSS  60
FWRKNKKEIL RKEFVCCKQG AYRKDETRER KRQRGISRCN CKAKIVVMKT HGSKKYTISL  120
FAEGHNHKVT PSGRMHLLRS HRRISDSTKV LTKQLGSVNI PINQKVSIFE VQSGGMDKIG  180
FIKKDMYNLE CSVNGKLRNH DVELVTEYFM AEQKKNEAFY FKIEGDGDNR FSRCFWADAT  240
SRRAYGFYGD VVVFDTTFNT NRYDLTFAPM LGVNNHGQTI VLACAFLSKE TTESFIWMFE  300
EFKKAMPGGE PKTIITDQDA AMSRAISIAF PTTFHRLCIW HITSKFSVKL PHSAYKEYWG  360
EFQKAIWDTD NKDEFDAKWN IVVTKAGLTD HPWLSSMQSI NRDENLLAAA LCFWNSASNT  420
FDFRIGPMAP TLLDMAQIFG FRPHRRPVDV VGDYHWKKNQ QKLAKPFNIS PALINQNCSF  480
SNYLRKFSAE KDKD
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008227616.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2535480.0AC253548.1 Prunus persica cultivar Lovell clone JGIBIXB-13B9, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008227616.20.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A067D5X91e-133A0A067D5X9_CITSI; Uncharacterized protein
STRINGXP_008227616.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.13e-73FAR1-related sequence 5