PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008227678.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

HB-other

Protein Properties

Length: 490aa MW: 55348.3 Da PI: 8.1199

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008227678.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.2	3.3e-19	20	75	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +kR t+ ql +Le+++++++yp++e++ + A++lgL+e+q++ WF+ rR k+k+ XP_008227678.1 20 KKRKLKTPAQLMALEKFYNEHKYPTEEMKSQVAEQLGLSEKQISGWFCHRRLKDKR 75 89****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.4E-21	2	75	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.135	16	76	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.2E-17	18	84	IPR009057	Homeodomain-like
SMART	SM00389	2.6E-19	18	80	IPR001356	Homeobox domain
Pfam	PF00046	1.1E-16	20	75	IPR001356	Homeobox domain
CDD	cd00086	4.77E-17	20	75	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 490 aa Download sequence Send to blast
MEESNELHSE ENKTSQDNNK KRKLKTPAQL MALEKFYNEH KYPTEEMKSQ VAEQLGLSEK 60 QISGWFCHRR LKDKRLSRDE TCANGRQDRS SGVIQDRASG LGQDSCGSTK HGDHRYVDPR 120 EVESRRLSGH DFPAADITRE YRSHYTERVG GMDNTSSESS SSLQDRFFTQ NEDPYDVETS 180 RYLAHNGVFS PINPRGTENM AYKPAGYLKV KGEAENAAIT AVKRQLGRHY QEDGPPLGVE 240 FDLLPPGAFE SPIMDSVHEP SIVGNPVLRS PDISGVKGQL SPRTRYEVYN SKFSSQDSYI 300 QQENPCIMHG FDLQEKKSSK KLRQKSTYIN HTNSSPGKNS SLDIYDKSVG GTSAYNTNRK 360 DKMRSKRGYS GRKVTSEQTE PCLHEYDRVS SPKLVQRSDY LKPKPSSSIE NLDGECKAMK 420 VYSNPIRVMM NSTDEMVVAK QARVNLPQRD YSTNSFPQLP PRKNQIKGTA MEMPSSFSED 480 ETAETNSSVD

Sequence ? help Back to Top

Protein Sequence Length: 490 aa Download sequence Send to blast

MEESNELHSE ENKTSQDNNK KRKLKTPAQL MALEKFYNEH KYPTEEMKSQ VAEQLGLSEK  60
QISGWFCHRR LKDKRLSRDE TCANGRQDRS SGVIQDRASG LGQDSCGSTK HGDHRYVDPR  120
EVESRRLSGH DFPAADITRE YRSHYTERVG GMDNTSSESS SSLQDRFFTQ NEDPYDVETS  180
RYLAHNGVFS PINPRGTENM AYKPAGYLKV KGEAENAAIT AVKRQLGRHY QEDGPPLGVE  240
FDLLPPGAFE SPIMDSVHEP SIVGNPVLRS PDISGVKGQL SPRTRYEVYN SKFSSQDSYI  300
QQENPCIMHG FDLQEKKSSK KLRQKSTYIN HTNSSPGKNS SLDIYDKSVG GTSAYNTNRK  360
DKMRSKRGYS GRKVTSEQTE PCLHEYDRVS SPKLVQRSDY LKPKPSSSIE NLDGECKAMK  420
VYSNPIRVMM NSTDEMVVAK QARVNLPQRD YSTNSFPQLP PRKNQIKGTA MEMPSSFSED  480
ETAETNSSVD

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008227678.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008227678.1	0.0	PREDICTED: uncharacterized protein LOC103327167
TrEMBL	A0A251PSY1	0.0	A0A251PSY1_PRUPE; Uncharacterized protein
STRING	XP_008227678.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5792	30	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G03250.1	1e-101	HB-other family protein