PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008227928.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family NAC
Protein Properties Length: 365aa    MW: 42195.7 Da    PI: 4.4528
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008227928.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM56.78e-18101363128
             NAM   3 pGfrFhPtdeelvveyLkkkvegkk.....leleevikevdiy..kvePwdLpk...kvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 
                      GfrF+Ptd+e++  +L k v +k+      + ++vi++++++  + eP+++ +     + +++++yf s+ ++   +g r +r+t +g+W++t 
  XP_008227928.1  10 LGFRFRPTDQEIIGSFLYKMVVEKRpltsmPQYNKVIHKCNLFgnNREPSEIWRdygGDQLKDQDLYFISELQR---NGLRIQRKTGRGTWSETE 101
                     6*******************9999889886556678****98622669****7523322236678899998877...699**************9 PP

             NAM  88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                     + ++v +     +g k+ + + +g+a++  ++ W+++ey+l
  XP_008227928.1 102 TYQNVDV-----IGRKRKFRYENGNASE-DHAVWLLDEYSL 136
                     9888866.....**********999998.89********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100519.658162IPR003441NAC domain
SuperFamilySSF1019411.31E-189162IPR003441NAC domain
PfamPF023655.5E-1311136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MANSGVTQLL GFRFRPTDQE IIGSFLYKMV VEKRPLTSMP QYNKVIHKCN LFGNNREPSE  60
IWRDYGGDQL KDQDLYFISE LQRNGLRIQR KTGRGTWSET ETYQNVDVIG RKRKFRYENG  120
NASEDHAVWL LDEYSLFRKA SKNGTSSNCY DFDVVICRLR RKGNMDKSGK KRKCSSQDQS  180
NKKMKRDQST KEMKTENSVG PQIMNDERNQ LMINESTTYD QEYLIDTNYK SFDIDQLFTE  240
LDREPPLLHS QQLPQIAESQ EEPCVDQING PAEAATSNLS NFEYNSDELA GLIGQYNMNA  300
DDYEDPNLFI DVDELLAADA EPLSTFAELD DVHNVVSQPL DQNGYWSNSF MDQTYNSFME  360
EIMAD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1159184RRKGNMDKSGKKRKCSSQDQSNKKMK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008227928.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008227928.10.0PREDICTED: NAC transcription factor 29-like
TrEMBLM5W3Q10.0M5W3Q1_PRUPE; Uncharacterized protein (Fragment)
STRINGXP_008227928.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1785336
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10480.23e-13NAC domain containing protein 50