PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008227976.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

NAC

Protein Properties

Length: 365aa MW: 42070.7 Da PI: 4.4792

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008227976.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	56.1	1.2e-17	10	136	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkk.....leleevikevdi..ykvePwdLpkkvka...eekewyfFskrdkkyatgkrknratksgyWkatg 87 GfrF+Ptd+e++ +L k v +k+ + ++vi+++++ +k eP+++ + + + +++++yf s+ ++ +g r +r+t +g+W++t XP_008227976.1 10 LGFRFRPTDQEIIGSFLYKMVVEKRpltsmPQYNKVIHKCNLfgNKREPSEIWRDYGGdqlTDQDLYFVSELQR---NGLRIQRKTGRGTWSETE 101 6*****************99998898865566789833577*7533332225567788887766...799**********9 PP NAM 88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 + ++v + +g k+ + + +g+a++ ++ W+++ey+l XP_008227976.1 102 TYQNVDV-----IGRKRKFRYENGNASE-DHAVWLLDEYSL 136 9888866.....******999998.89******97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	19.29	8	162	IPR003441	NAC domain
SuperFamily	SSF101941	1.57E-18	9	162	IPR003441	NAC domain
Pfam	PF02365	6.9E-13	11	136	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 365 aa Download sequence Send to blast
MANSGVTQLL GFRFRPTDQE IIGSFLYKMV VEKRPLTSMP QYNKVIHKCN LFGNKREPSE 60 IWRDYGGDQL TDQDLYFVSE LQRNGLRIQR KTGRGTWSET ETYQNVDVIG RKRKFRYENG 120 NASEDHAVWL LDEYSLFKKA CKNGTSSNCY DFDVVICRLR RKGNMDKSGK KRKCSCQDQS 180 NKKMKRDQST KEMKTEISVG PQIMNDERNQ LMINESTTYD QEYLIDTNYK SFNIDQLFAG 240 LDGEPPLLHS QQLPQIAESQ EEPCVDQIDG PAEAATSNLS NFEYNRDELA GLIGQYNMNA 300 DDYEDQNLFI DVDELLAADA EPLSTFAELD DVHNVVSQPL DQNGYWSNSF MDQTYNSFME 360 EIMAD

Sequence ? help Back to Top

Protein Sequence Length: 365 aa Download sequence Send to blast

MANSGVTQLL GFRFRPTDQE IIGSFLYKMV VEKRPLTSMP QYNKVIHKCN LFGNKREPSE  60
IWRDYGGDQL TDQDLYFVSE LQRNGLRIQR KTGRGTWSET ETYQNVDVIG RKRKFRYENG  120
NASEDHAVWL LDEYSLFKKA CKNGTSSNCY DFDVVICRLR RKGNMDKSGK KRKCSCQDQS  180
NKKMKRDQST KEMKTEISVG PQIMNDERNQ LMINESTTYD QEYLIDTNYK SFNIDQLFAG  240
LDGEPPLLHS QQLPQIAESQ EEPCVDQIDG PAEAATSNLS NFEYNRDELA GLIGQYNMNA  300
DDYEDQNLFI DVDELLAADA EPLSTFAELD DVHNVVSQPL DQNGYWSNSF MDQTYNSFME  360
EIMAD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	159	184	RRKGNMDKSGKKRKCSCQDQSNKKMK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008227976.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008227976.1	0.0	PREDICTED: uncharacterized protein LOC103327422
TrEMBL	M5W3Q1	0.0	M5W3Q1_PRUPE; Uncharacterized protein (Fragment)
STRING	XP_008227976.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF17853	3	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10480.2	3e-13	NAC domain containing protein 50