PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008228073.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

FAR1

Protein Properties

Length: 170aa MW: 19491.9 Da PI: 6.1614

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008228073.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	25.5	4.3e-08	60	140	12	88
FAR1 12 FsvrkskskkskrngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHe 88 F +++ +s + + ++ + t+ C ++g+ +++ k +++ rr+ +++gC +lk k+ + d++w+++ + HnH XP_008228073.1 60 FVIVTLRSDQGGKGNKKPRVTLGCERYGEYRKRIPKkdiKDEDRRHAGYKKCGCPFQLKGKRLEtDDHWMLIVVTGVHNHI 140 7888888888878888999*******988876665678899999999******999888*************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	7.5E-6	60	139	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 170 aa Download sequence Send to blast
MDVEEHDFGE KGDEYSGCSN VDFEQIVDCT SEFTTNEISI FNNREELIRW AREVGRANDF 60 VIVTLRSDQG GKGNKKPRVT LGCERYGEYR KRIPKKDIKD EDRRHAGYKK CGCPFQLKGK 120 RLETDDHWML IVVTGVHNHI AAEHLEGHSF AGRLSFEETS LLLDISKSLV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008228073.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008228073.1	1e-124	PREDICTED: uncharacterized protein LOC103327515
TrEMBL	M5XIH9	2e-93	M5XIH9_PRUPE; Uncharacterized protein (Fragment)
STRING	XP_008228073.1	1e-124	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF180	11	22