PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008228202.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family AP2
Protein Properties Length: 585aa    MW: 64528.5 Da    PI: 6.8721
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008228202.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.96.6e-15261320155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s+++GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  XP_008228202.1 261 SQFRGVTRHRWTGRYEAHLWDnSCRkEGqtRKgRQVYLGGYDKEEKAARAYDLAALKYWG 320
                     789******************655454478446*************************98 PP
2AP2483e-15363414155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  XP_008228202.1 363 SVYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 414
                     78****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.24E-21261330No hitNo description
SuperFamilySSF541711.57E-16261330IPR016177DNA-binding domain
PROSITE profilePS5103218.689262328IPR001471AP2/ERF domain
PfamPF008472.3E-11262320IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-15262329IPR001471AP2/ERF domain
SMARTSM003802.8E-29262334IPR001471AP2/ERF domain
PRINTSPR003673.6E-6263274IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-18363424IPR016177DNA-binding domain
CDDcd000182.43E-24363424No hitNo description
PfamPF008476.0E-10363414IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-18364423IPR001471AP2/ERF domain
SMARTSM003806.7E-34364428IPR001471AP2/ERF domain
PROSITE profilePS5103219.006364422IPR001471AP2/ERF domain
PRINTSPR003673.6E-6404424IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 585 aa     Download sequence    Send to blast
MSNWLGFSLT PHLRIHEGFG GGEDQQDHGG GGGGEGFTSQ MTIMPLRSDG SLCVPPADPF  60
RRPNGSEDWR YENHMGATSV TDPNDEGGPK LEDFLGSCYT SSPPPSETKV YNCQSTQQDQ  120
NPETISQINV NEAPNFNTTT NNGEDNNNNH HLIQPYSHYC TLNPPSLVQS NGMYKSWLGQ  180
TVPFSNEKST PRGDHHQANG NSFHQSHLSL TMSPSLQQNG NNMGGISQLQ IVESKKRPVG  240
KSAAREPVPR KSIDTFGQRT SQFRGVTRHR WTGRYEAHLW DNSCRKEGQT RKGRQVYLGG  300
YDKEEKAARA YDLAALKYWG STTHINFPLS TYEKELEEMK NMTRQEFVAN LRRKSSGFSR  360
GASVYRGVTR HHQHGRWQAR IGRVAGNKDL YLGTFSTQEE AAEAYDIAAI KFRGTSAVTN  420
FDMSRYDVKR ICSSSTLIAS ELAKRSPKDY TPAAIEDFNS CGSSTSAQPL LAIASGEPCD  480
DMAEMVWNNN NSEDHSHSHH ENSNTTNNNA ALGASSSRNS SSPQSPKCSF DHTSEFGLGG  540
GDYSHAYFSL QGAKYEDGNG GGNDHSRLGN LGLVPQVPMF ALWND
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008228202.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008228202.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL1
SwissprotQ1PFE11e-138AIL1_ARATH; AP2-like ethylene-responsive transcription factor AIL1
TrEMBLA0A251PUZ80.0A0A251PUZ8_PRUPE; Uncharacterized protein
STRINGXP_008228202.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF102743137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.11e-134AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]