PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008228203.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB
Protein Properties Length: 222aa    MW: 25597.9 Da    PI: 9.4421
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008228203.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding63.54.2e-202875148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd +l+++++ +G ++WktIa++ g++R++k+c++rw++yl
   XP_008228203.1 28 KGAWTAEEDHKLAEVIEVHGAKRWKTIASKAGLNRCGKSCRLRWLNYL 75
                     79********************************************97 PP
2Myb_DNA-binding50.54.6e-1681126148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+ + +E++l+++++k+lG++ W++Ia +++ gRt++++k++w+++l
   XP_008228203.1  81 RGNISDQEEDLILRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNSHL 126
                      78999*****************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.9052379IPR017930Myb domain
SuperFamilySSF466891.58E-2926122IPR009057Homeodomain-like
SMARTSM007173.2E-152777IPR001005SANT/Myb domain
PfamPF002491.5E-182875IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.6E-252982IPR009057Homeodomain-like
CDDcd001672.33E-103075No hitNo description
SMARTSM007171.9E-1580128IPR001005SANT/Myb domain
PROSITE profilePS5129420.43680130IPR017930Myb domain
PfamPF002491.9E-1481126IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-2483131IPR009057Homeodomain-like
CDDcd001678.55E-1085126No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MAPMTEESIK RKAKAGEAMK SSKREVNKGA WTAEEDHKLA EVIEVHGAKR WKTIASKAGL  60
NRCGKSCRLR WLNYLRPNIK RGNISDQEED LILRLHKLLG NRWSLIAGRL PGRTDNEIKN  120
YWNSHLSKRI IQKEKQIGAN PTRQMVSTDH KLSLAEHHQK VHIEMKEDSS SEEGASFASK  180
DSNKNMNNID VDDFFDFSNE GPLNLEWVSK FLDFDDDRWL IN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-292513024128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008228203.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008228203.11e-164PREDICTED: transcription factor MYB114-like
TrEMBLM5WVH01e-157M5WVH0_PRUPE; Uncharacterized protein
STRINGXP_008228203.11e-163(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21483288
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09460.11e-54myb domain protein 6