PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008228480.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

bHLH

Protein Properties

Length: 342aa MW: 37674.1 Da PI: 7.2214

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008228480.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.8	0.00044	205	243	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ +++ L +l+ + +K + a++L +A+ YI+ Lq XP_008228480.1 205 RKEKLGDRITALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 243 6677889999999999998.....8******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.331	193	242	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.2E-7	203	252	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.10E-5	203	247	No hit	No description
SuperFamily	SSF47459	4.71E-10	203	254	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 342 aa Download sequence Send to blast
MMAGNPNWWS SMHPPSLFPS QYVQLGSSNS LPLNSLPEHN LEPPQSWSQL LLYLSLSLGG 60 LSSQEDGFGT LSHFQPKGRL ENWEEDQILI PQYPRAPVVD FIKQESNSQN SINLCNNPHG 120 DEEFQLAPSS RPVWSPVQIM PVSSPRSCVT SLSNNNILDF SYNKADNKRN QHADHSSECN 180 STATGGMCKK ARVQPSPSQP PLKVRKEKLG DRITALHQLV SPFGKTDTAS VLLEAIGYIR 240 FLQGQIEALS SPYLGNASKN MRNQQSVQGE RNCTCVFPED PGQLLNDNCL KRKGAPNQHP 300 SSQDKAKDLR SKGLCLVPVS FTQHVGSDNG ADYWAPAYGS GF

Sequence ? help Back to Top

Protein Sequence Length: 342 aa Download sequence Send to blast

MMAGNPNWWS SMHPPSLFPS QYVQLGSSNS LPLNSLPEHN LEPPQSWSQL LLYLSLSLGG  60
LSSQEDGFGT LSHFQPKGRL ENWEEDQILI PQYPRAPVVD FIKQESNSQN SINLCNNPHG  120
DEEFQLAPSS RPVWSPVQIM PVSSPRSCVT SLSNNNILDF SYNKADNKRN QHADHSSECN  180
STATGGMCKK ARVQPSPSQP PLKVRKEKLG DRITALHQLV SPFGKTDTAS VLLEAIGYIR  240
FLQGQIEALS SPYLGNASKN MRNQQSVQGE RNCTCVFPED PGQLLNDNCL KRKGAPNQHP  300
SSQDKAKDLR SKGLCLVPVS FTQHVGSDNG ADYWAPAYGS GF

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008228480.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008228480.1	0.0	PREDICTED: transcription factor bHLH68-like isoform X1
Swissprot	Q8S3D1	1e-76	BH068_ARATH; Transcription factor bHLH68
TrEMBL	A0A251PW95	0.0	A0A251PW95_PRUPE; Uncharacterized protein
STRING	XP_008228480.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1223	33	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29100.1	4e-78	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Le Hir R, et al. AtbHLH68 transcription factor contributes to the regulation of ABA homeostasis and drought stress tolerance in Arabidopsis thaliana. Physiol Plant, 2017. 160(3): p. 312-327 [PMID:28369972] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]