PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008228482.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 325aa    MW: 35813.1 Da    PI: 7.8728
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008228482.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.90.000412052431255
                     HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     R +++ +++  L +l+ +      +K + a++L +A+ YI+ Lq
  XP_008228482.1 205 RKEKLGDRITALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 243
                     6677889999999999998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.331193242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.2E-7203251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.32E-10203254IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.00E-5203247No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MMAGNPNWWS SMHPPSLFPS QYVQLGSSNS LPLNSLPEHN LEPPQSWSQL LLYLSLSLGG  60
LSSQEDGFGT LSHFQPKGRL ENWEEDQILI PQYPRAPVVD FIKQESNSQN SINLCNNPHG  120
DEEFQLAPSS RPVWSPVQIM PVSSPRSCVT SLSNNNILDF SYNKADNKRN QHADHSSECN  180
STATGGMCKK ARVQPSPSQP PLKVRKEKLG DRITALHQLV SPFGKTDTAS VLLEAIGYIR  240
FLQGQIEALS SPYLGNASKN MRNQQSLLND NCLKRKGAPN QHPSSQDKAK DLRSKGLCLV  300
PVSFTQHVGS DNGADYWAPA YGSGF
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008228482.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1495451e-57BT149545.1 Medicago truncatula clone JCVI-FLMt-16P10 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008228482.10.0PREDICTED: transcription factor bHLH68-like isoform X3
SwissprotQ8S3D14e-64BH068_ARATH; Transcription factor bHLH68
TrEMBLA0A251PXJ10.0A0A251PXJ1_PRUPE; Uncharacterized protein
STRINGXP_008228480.10.0(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29100.12e-65bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Le Hir R, et al.
    AtbHLH68 transcription factor contributes to the regulation of ABA homeostasis and drought stress tolerance in Arabidopsis thaliana.
    Physiol Plant, 2017. 160(3): p. 312-327
    [PMID:28369972]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]