PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008228654.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 253aa    MW: 28799.5 Da    PI: 9.0291
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008228654.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.52e-077296126
                    --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                    +kt+lC++f   G C+yG  C+FaHg
  XP_008228654.1 72 FKTRLCNNFKM-GNCHYGQGCCFAHG 96
                    79*********.*************8 PP
2zf-CCCH18.92.7e-06130150525
                     --SGGGGTS--TTTTT-SS-S CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                      Cr f+ +G C yGd+C++ H
  XP_008228654.1 130 VCRLFFNGGKCTYGDKCRYPH 150
                     6*****************977 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902293.01E-769102IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.9297198IPR000571Zinc finger, CCCH-type
SMARTSM003560.00427197IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.9E-1271102IPR000571Zinc finger, CCCH-type
PfamPF006428.2E-57296IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.33E-6124153IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.591125154IPR000571Zinc finger, CCCH-type
SMARTSM003560.36126152IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-4129151IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MSDYGPTCQF FAPYLESGDN RYQLKPEFPN ADKDFKDLSD IESQPFKKPR TSEVVLISAI  60
PMAQNKTLPC NFKTRLCNNF KMGNCHYGQG CCFAHGISDL RKTWRNWQGL ETEEGFKART  120
CDHRRTSNDV CRLFFNGGKC TYGDKCRYPH HVTPENIREK SAISISTTGA HIGGSGQFYS  180
KRSLVESGSV QNSRTSSTSM SKRRMGIGAT YRKQLQGREC NFKWNELEKM SRIYADWIED  240
IPLVRGSSSK AEC
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008228654.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008228654.10.0PREDICTED: zinc finger CCCH domain-containing protein 28-like
TrEMBLA0A251PX341e-176A0A251PX34_PRUPE; Uncharacterized protein
STRINGXP_008228654.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15275712
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.17e-12C3H family protein