PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008228666.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

NF-YB

Protein Properties

Length: 156aa MW: 17228.6 Da PI: 9.1024

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008228666.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	42.2	2e-13	8	97	5	88
NF-YB 5 drflPianvsrimkkvlPanak......iskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylk 88 ++lP a v r++k l + +k + k+a e + fi ++++ a+d c+++kr+ti++dd+l al ++ f ++++pl++ lk XP_008228666.1 8 AEELPKAIVRRVVKDKLSQCSKgdgdltLHKEALLAFSESARIFIHYLSATANDICKEKKRQTISADDVLKALEEIEFSEFIKPLEASLK 97 5789**********9987773344335677777889*********************************************99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	8.9E-30	7	147	IPR009072	Histone-fold
Pfam	PF00808	3.3E-10	10	80	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamily	SSF47113	1.9E-23	11	140	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 156 aa Download sequence Send to blast
MAKVVAEAEE LPKAIVRRVV KDKLSQCSKG DGDLTLHKEA LLAFSESARI FIHYLSATAN 60 DICKEKKRQT ISADDVLKAL EEIEFSEFIK PLEASLKGKN PGKNAEKSGG KKAGKQKAGT 120 SKAKEVKKKR KLEEPSSQKL KEKEEDNQDE NGSDDE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	126	131	KKKRKL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008228666.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008228666.1	1e-107	PREDICTED: DNA polymerase epsilon subunit 3
TrEMBL	A0A251NPS1	1e-104	A0A251NPS1_PRUPE; Uncharacterized protein
STRING	XP_008228666.1	1e-106	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF11863	32	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27470.1	3e-41	nuclear factor Y, subunit B11