PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008228719.2

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

FAR1

Protein Properties

Length: 1371aa MW: 158142 Da PI: 6.9483

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008228719.2	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	68.3	1.9e-21	60	143	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 ++Yn YAkevGF+vr+++s +++++e + + ++Cs +g+++ ++ + r r+etrtgC a+l++++ ++++w+v ++ leHnH l XP_008228719.2 60 NYYNCYAKEVGFRVRVKNSWFKRNSREKYGAVLCCSSQGFKRIKDVN-----RLRKETRTGCPAMLRMRLVDSKRWRVLEVTLEHNHLL 143 69***************************************9988.....99*******************************87 PP
2	FAR1	70	5.8e-22	763	845	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fYn YAk+ GF vr+s++ ++ +++e ++ ++ Cs g++++++ + r+r+etrtgC a++k +++++++w+v+++eleHnH ++ XP_008228719.2 763 FYNCYAKQQGFGVRVSNTWYR-KSKERYRGKLSCSSAGFKKKSEAN-----RPRPETRTGCPAMIKFRLMDSNRWRVIEVELEHNHLIS 845 9*************99997.66779**********99888.....*********************************876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.5E-18	60	143	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.8E-32	262	355	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.891	549	585	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	3.8E-4	551	581	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.1E-6	560	587	IPR006564	Zinc finger, PMZ-type
Pfam	PF03101	4.5E-19	763	845	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	4.7E-28	966	1060	IPR018289	MULE transposase domain
PROSITE profile	PS50966	8.568	1253	1289	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	5.1E-4	1261	1286	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	6.7E-6	1264	1291	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1371 aa Download sequence Send to blast
MEVASANIEL VPDGECNEIV TDRDGVLTEL DVQNGVLEGR KEFVAPAVGM EFESYDDAYN 60 YYNCYAKEVG FRVRVKNSWF KRNSREKYGA VLCCSSQGFK RIKDVNRLRK ETRTGCPAML 120 RMRLVDSKRW RVLEVTLEHN HLLGAKIYKS IKKVGSGMKR KSQSSSDAEK RTIKLYRALV 180 IDSGGDGTSN SNPTDIRNFP DHPNQLNLKK GDTQAIYNYL CRMQLTNPNF FYLMDLNDDG 240 RLRNVFWMDA RCRAACGYFA DVIYFDNTYL SNKYEIPLVA FVGINHHGQT VLLGCALLAG 300 ETTESYTWLF RAWLTCVSGH FPQTIITDRC KALQSAIAEV FPRCHHRFGL SHIIKKVPEK 360 LGGLRNYDAI RKALIKAVYE TLKVIEFEAA WGFMIQRFGV GDHEWLRSLY EDRFRWAPVY 420 LKETFFAGMS AARPGETLSP FFDRYVHKQT PLKEFLDKYE LALQKKHKEE ALADIESRSS 480 SPILKTRCSF EFQLSKVYTR EIFKKFQFEV EEMYSCFSTT QLHIDGPIII FLVKERVVVE 540 GNRREIRDYE VLYNRTAGEV RCICSCFNFY GYLCRHALCV LNFNGVEEIP SKYILSRWKK 600 DFKRIYIPDH SSGNADDTDR MQWFNQLYRS ALQIVEEGVI SPDHYKVALQ AFEESLNRVH 660 DVEDKHEFSS IGLSHFVRHA PLSLLSECTC RFSGNSPATL RSDMDEVSLN TEPAGDDDAD 720 EFEIEGDCAM TDFISQTGII QGENPLPPVV GMEFDSYEDV YYFYNCYAKQ QGFGVRVSNT 780 WYRKSKERYR GKLSCSSAGF KKKSEANRPR PETRTGCPAM IKFRLMDSNR WRVIEVELEH 840 NHLISPASGK FYKSHKSVGV GTKRALQLDT AEEVQKIRLF RTVIIDSEGN GSIDVDEGES 900 GNRVDYSNQL KLKEGDAQAV QIYFSRLQLM DPNFFYVVDL NEKGCLRNLF WADARTRVAY 960 SYFCDIVAID TTCLENKFEV PLVSFIGVNH HGQSVLLGCG LLASETVESY TWLFRAWLTC 1020 ILGRPPQAII TSQCRTLQTA ISDVFPRASH CLCLSHIMQK IPENLGGLFE YEAIKESFSR 1080 AVYYSLRVEE FEAAWEDMVQ HHGIRDHKWL QALFDDRKRW VPVYLKDIFL AGMSPVQPGE 1140 VVSSYFKEFL HKDTPLKEFL DKYDQALQTH HRLEALADLD SRNSSYMLKS RCYFELQLSK 1200 VYTNDILRKF ESEVEGMYSC FSTSQLNPDG PVITYIVKEQ TEVDGNRREV RDHEVLYNPS 1260 EMEVLCICGM FNLRGYLCRH ALSVLNQNGV EEIPTQYVLS RWRKDIKRNY IFDHSCSGID 1320 INNPVHRYDH LYKCIVQVVE EGRKSQDRYK VAFGALDEIL NKLCLTEDPA L

Sequence ? help Back to Top

Protein Sequence Length: 1371 aa Download sequence Send to blast

MEVASANIEL VPDGECNEIV TDRDGVLTEL DVQNGVLEGR KEFVAPAVGM EFESYDDAYN  60
YYNCYAKEVG FRVRVKNSWF KRNSREKYGA VLCCSSQGFK RIKDVNRLRK ETRTGCPAML  120
RMRLVDSKRW RVLEVTLEHN HLLGAKIYKS IKKVGSGMKR KSQSSSDAEK RTIKLYRALV  180
IDSGGDGTSN SNPTDIRNFP DHPNQLNLKK GDTQAIYNYL CRMQLTNPNF FYLMDLNDDG  240
RLRNVFWMDA RCRAACGYFA DVIYFDNTYL SNKYEIPLVA FVGINHHGQT VLLGCALLAG  300
ETTESYTWLF RAWLTCVSGH FPQTIITDRC KALQSAIAEV FPRCHHRFGL SHIIKKVPEK  360
LGGLRNYDAI RKALIKAVYE TLKVIEFEAA WGFMIQRFGV GDHEWLRSLY EDRFRWAPVY  420
LKETFFAGMS AARPGETLSP FFDRYVHKQT PLKEFLDKYE LALQKKHKEE ALADIESRSS  480
SPILKTRCSF EFQLSKVYTR EIFKKFQFEV EEMYSCFSTT QLHIDGPIII FLVKERVVVE  540
GNRREIRDYE VLYNRTAGEV RCICSCFNFY GYLCRHALCV LNFNGVEEIP SKYILSRWKK  600
DFKRIYIPDH SSGNADDTDR MQWFNQLYRS ALQIVEEGVI SPDHYKVALQ AFEESLNRVH  660
DVEDKHEFSS IGLSHFVRHA PLSLLSECTC RFSGNSPATL RSDMDEVSLN TEPAGDDDAD  720
EFEIEGDCAM TDFISQTGII QGENPLPPVV GMEFDSYEDV YYFYNCYAKQ QGFGVRVSNT  780
WYRKSKERYR GKLSCSSAGF KKKSEANRPR PETRTGCPAM IKFRLMDSNR WRVIEVELEH  840
NHLISPASGK FYKSHKSVGV GTKRALQLDT AEEVQKIRLF RTVIIDSEGN GSIDVDEGES  900
GNRVDYSNQL KLKEGDAQAV QIYFSRLQLM DPNFFYVVDL NEKGCLRNLF WADARTRVAY  960
SYFCDIVAID TTCLENKFEV PLVSFIGVNH HGQSVLLGCG LLASETVESY TWLFRAWLTC  1020
ILGRPPQAII TSQCRTLQTA ISDVFPRASH CLCLSHIMQK IPENLGGLFE YEAIKESFSR  1080
AVYYSLRVEE FEAAWEDMVQ HHGIRDHKWL QALFDDRKRW VPVYLKDIFL AGMSPVQPGE  1140
VVSSYFKEFL HKDTPLKEFL DKYDQALQTH HRLEALADLD SRNSSYMLKS RCYFELQLSK  1200
VYTNDILRKF ESEVEGMYSC FSTSQLNPDG PVITYIVKEQ TEVDGNRREV RDHEVLYNPS  1260
EMEVLCICGM FNLRGYLCRH ALSVLNQNGV EEIPTQYVLS RWRKDIKRNY IFDHSCSGID  1320
INNPVHRYDH LYKCIVQVVE EGRKSQDRYK VAFGALDEIL NKLCLTEDPA L

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008228719.2

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008228719.2	0.0	PREDICTED: uncharacterized protein LOC103328106
Swissprot	Q9SSQ4	0.0	FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6
TrEMBL	A0A371GLZ6	0.0	A0A371GLZ6_MUCPR; Protein FAR1-RELATED SEQUENCE 6 (Fragment)
STRING	XP_004486559.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	0.0	FAR1-related sequence 6

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]