PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008228924.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family G2-like
Protein Properties Length: 431aa    MW: 48959.6 Da    PI: 8.7086
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008228924.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like99.12.9e-31110163255
         G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     prlrWtp+LH +Fv+av++LGG+e+AtPk +l+lm+v gL+++hvkSHLQ+YR+
  XP_008228924.1 110 PRLRWTPDLHLAFVHAVDRLGGQERATPKLVLQLMNVRGLSIAHVKSHLQMYRS 163
                     8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.533106166IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.4E-29106164IPR009057Homeodomain-like
SuperFamilySSF466894.3E-14108164IPR009057Homeodomain-like
TIGRFAMsTIGR015573.0E-22110165IPR006447Myb domain, plants
PfamPF002492.5E-8111162IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MLSGGPKEID RRDMAPDRIE ISDEDDQSSD ASYEIQAKND RLLSSQKCLF FDLNEEASTG  60
DDDQDVSSNE GTQAVGSRTS PEGNLSCNNT SVEGKERTIA VRQYVRSKMP RLRWTPDLHL  120
AFVHAVDRLG GQERATPKLV LQLMNVRGLS IAHVKSHLQM YRSKKLDESG QVISQSSRGM  180
RVKDHILEAY RKFNPYRHLR HVDDSGSHFC SPSVLKQQPY DDFNANSSRS ISLWGENSRI  240
DNHGSNIRGS HIFHVREAIT RVGPFRPSRF LEEKRWPPCE LIGNHMKGRR HLLSFTWGDI  300
NNVPQPDNLV WSAKASTINQ HQPNTRGPKF ISSSYEHLTQ LEVQKLQCIN GEMFQPKVDP  360
NMKTMRQKTW VPDLQLSLSH DFSNGSVVND SQESRKDFES MLSLSLSSSS ARQQEQSTTP  420
TSRIRLSVSR T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A1e-18111165357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-18111165357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-18111165357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-18111165357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008228924.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT8934060.0KT893406.1 Prunus persica cultivar Xiaobaitao putative Myb family transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008228924.10.0PREDICTED: uncharacterized protein LOC103328312 isoform X2
TrEMBLA0A314ZD530.0A0A314ZD53_PRUYE; Uncharacterized protein
STRINGXP_008228923.10.0(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38300.12e-38G2-like family protein