PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008228977.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C2H2
Protein Properties Length: 310aa    MW: 34973.9 Da    PI: 8.5433
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008228977.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.81.9e-05152171120
                     EEETTTTEEESSHHHHHHHH CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                     + C++C+k+F+r  n++ H+
  XP_008228977.1 152 FACSICSKTFNRYNNMQMHM 171
                     78*****************9 PP
2zf-C2H211.50.00092236258123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     + C +C k+F  k + ++H +++
  XP_008228977.1 236 FMCRKCAKTFAVKGDWRTHEKNC 258
                     89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.51E-5143175No hitNo description
PROSITE profilePS5015710.45152179IPR007087Zinc finger, C2H2
SMARTSM003550.17152174IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.2E-5152171IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280154174IPR007087Zinc finger, C2H2
SMARTSM00355190199231IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.609.8E-5222256IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.72E-5222256No hitNo description
SMARTSM0035578236256IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MGLWNHHVEG QNLCFQAPPF IEWLKPPSSF SSSSSPSLCL SENSTTMQCL PLLSQFTDTK  60
PVKIEDVGVQ KEGFGVKEEK MGQVTVALRI GLPNSTSEAD QSDTPHENKK VLDLKEEEGV  120
AMRKSFHGCS FNAESRFWIP TPAQILVGPM QFACSICSKT FNRYNNMQMH MWGHGSEFRK  180
GPDSLKGTQP AAMLRLPCYC CAQGCKNNIN HPRAKPLKDF RTLQTHYKRK HGAKPFMCRK  240
CAKTFAVKGD WRTHEKNCGK LWYCTCGSDF KHKRSLKDHI RSFGKGHSPH PSLDGFHEDE  300
KECITGSEDD
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008228977.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008228977.10.0PREDICTED: zinc finger protein WIP3
SwissprotQ9SGD11e-125ZWIP3_ARATH; Zinc finger protein WIP3
TrEMBLM5W3N70.0M5W3N7_PRUPE; Uncharacterized protein
STRINGXP_008228977.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08290.11e-123WIP domain protein 3
Publications ? help Back to Top
  1. Zhou X,Meier I
    Efficient plant male fertility depends on vegetative nuclear movement mediated by two families of plant outer nuclear membrane proteins.
    Proc. Natl. Acad. Sci. U.S.A., 2014. 111(32): p. 11900-5
    [PMID:25074908]