PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008229117.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

NAC

Protein Properties

Length: 255aa MW: 29171.7 Da PI: 5.5171

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008229117.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	153.9	7.3e-48	4	135	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 lppG+rF Pt+eelv++yL +k+egk+ ++ +vi+ vdiy+ ePwdLpk +++++++w+fF++r++++a+g r+nr+t+sgyWkatg+ XP_008229117.1 4 LPPGYRFYPTEEELVSFYLLNKLEGKRDDTRRVIPVVDIYRKEPWDLPKfsgeLCHGDTEQWFFFTPRQQREAQGGRPNRTTASGYWKATGSPGY 98 79**************************99************656754445777******************************* PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 v+s++++++g+kkt+vfykg+ap+g+kt+W m+eyr+ XP_008229117.1 99 VYSSDNKVIGMKKTMVFYKGKAPTGRKTKWKMNEYRA 135 *********************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.4E-51	3	165	IPR003441	NAC domain
PROSITE profile	PS51005	50.348	4	166	IPR003441	NAC domain
Pfam	PF02365	4.4E-25	5	134	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence Send to blast
MEELPPGYRF YPTEEELVSF YLLNKLEGKR DDTRRVIPVV DIYRKEPWDL PKFSGELCHG 60 DTEQWFFFTP RQQREAQGGR PNRTTASGYW KATGSPGYVY SSDNKVIGMK KTMVFYKGKA 120 PTGRKTKWKM NEYRAIEADN PTTTTTTNSV PKYLRNEFRL CRVYVVSGSC RAFDRRPLEG 180 GGETKHQLSE SMGGTSTFSL MAPMVEKASS SDETYSYSGE LADLPETSAG INSTDWEIIE 240 GLEQPLWEWE QLNLL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-37	4	171	17	170	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-37	4	171	17	170	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-37	4	171	17	170	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-37	4	171	17	170	NO APICAL MERISTEM PROTEIN
3swm_A	3e-37	4	171	20	173	NAC domain-containing protein 19
3swm_B	3e-37	4	171	20	173	NAC domain-containing protein 19
3swm_C	3e-37	4	171	20	173	NAC domain-containing protein 19
3swm_D	3e-37	4	171	20	173	NAC domain-containing protein 19
3swp_A	3e-37	4	171	20	173	NAC domain-containing protein 19
3swp_B	3e-37	4	171	20	173	NAC domain-containing protein 19
3swp_C	3e-37	4	171	20	173	NAC domain-containing protein 19
3swp_D	3e-37	4	171	20	173	NAC domain-containing protein 19
4dul_A	3e-37	4	171	17	170	NAC domain-containing protein 19
4dul_B	3e-37	4	171	17	170	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008229117.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT051766	6e-41	BT051766.1 Medicago truncatula clone MTYF5_F6_F7_F81G-H-6 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008229117.1	0.0	PREDICTED: NAC domain-containing protein 90
Swissprot	Q9FMR3	3e-90	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	M5WHE7	1e-179	M5WHE7_PRUPE; Uncharacterized protein
STRING	XP_008229117.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF871	34	123

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	2e-91	NAC domain containing protein 90

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]