PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008229195.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family GRAS
Protein Properties Length: 597aa    MW: 64710.5 Da    PI: 4.9029
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008229195.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS452.33e-1382285881374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     lv++L++cAeav++++l+la+al++++  la++++ +m+++a+yf+eALa+r++r        + p+++ +++ s+ l++   f+e++P+lkf+h
  XP_008229195.1 228 LVHTLVACAEAVQQENLKLADALVKHVGLLAASQAGAMRKVATYFAEALARRIYR--------IYPQDSLDSSYSDILQM--HFYETCPYLKFAH 312
                     689****************************************************........44555554445555444..5************ PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190
                     +taNqaIlea+++++rvH+iDf+++qG+QWpaL+qaLa Rp+gpp +R+Tg+g+p+++++++l+++g++La++Ae++gv+fef+ +va++l+dle
  XP_008229195.1 313 FTANQAILEAFATASRVHVIDFGLKQGMQWPALMQALALRPGGPPAFRLTGIGPPQPDNTDALQQVGWKLAQLAETIGVEFEFRGFVANSLADLE 407
                     *********************************************************************************************** PP

            GRAS 191 leeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     +++L+++p   E++aVn+ ++lh ll++++++e+    vL+ +k ++Pk+v++veqea+hn++ Fl+rf eal+yys lfdsle +  +  +++ 
  XP_008229195.1 408 PSMLEIRPpdVETVAVNSCFELHPLLARPGAVEK----VLSSIKAMKPKIVTIVEQEANHNGPIFLDRFNEALHYYSNLFDSLEGS--SGPSQDL 496
                     ********999***********************....*********************************************999..566999* PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     ++++++lgr+i+nvvaceg++r+erhetl +Wr r+++aGF  v+l+++a kqa++ll+ ++ +dgyrvee++gsl+lgW++rpL+++SaW+
  XP_008229195.1 497 VMSEVYLGRQICNVVACEGQDRVERHETLTQWRGRMDSAGFDLVHLGSNAFKQASMLLALFAgGDGYRVEENNGSLMLGWHTRPLIATSAWQ 588
                     *******************************************************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF120418.2E-3552116IPR021914Transcriptional factor DELLA, N-terminal
SMARTSM011295.1E-3752124No hitNo description
PROSITE profilePS5098566.947202567IPR005202Transcription factor GRAS
PfamPF035141.1E-135228588IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009863Biological Processsalicylic acid mediated signaling pathway
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0042538Biological Processhyperosmotic salinity response
GO:2000033Biological Processregulation of seed dormancy process
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 597 aa     Download sequence    Send to blast
MKRDHRDTCT DQNGSKGEYS SSSSSVLNGK AKIWGQDQDG CGGSGGGGGG MDELLAVLGY  60
KVRASDMAEV AEKLEQLEMV MGSAQEDGIS QLSDTVHYNP SDLSGWVQSM LSEFNTVDGS  120
AIDDPLFVAA GSSSITSIHF SNSHQTENPA SRVFHDDSEY DLRAIPGVAA YPQTHLDSEA  180
ESRRKRLKTA IGSNSIGSNS GVGADSDSVS DPARPRVLVD SQETGVRLVH TLVACAEAVQ  240
QENLKLADAL VKHVGLLAAS QAGAMRKVAT YFAEALARRI YRIYPQDSLD SSYSDILQMH  300
FYETCPYLKF AHFTANQAIL EAFATASRVH VIDFGLKQGM QWPALMQALA LRPGGPPAFR  360
LTGIGPPQPD NTDALQQVGW KLAQLAETIG VEFEFRGFVA NSLADLEPSM LEIRPPDVET  420
VAVNSCFELH PLLARPGAVE KVLSSIKAMK PKIVTIVEQE ANHNGPIFLD RFNEALHYYS  480
NLFDSLEGSS GPSQDLVMSE VYLGRQICNV VACEGQDRVE RHETLTQWRG RMDSAGFDLV  540
HLGSNAFKQA SMLLALFAGG DGYRVEENNG SLMLGWHTRP LIATSAWQLA SSTESTR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A6e-6723558726378Protein SCARECROW
5b3h_A6e-6723558725377Protein SCARECROW
5b3h_D6e-6723558725377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that represses transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008229195.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ6670480.0KJ667048.1 Prunus mume DELLA mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001313433.10.0DELLA protein GAI
SwissprotQ84TQ70.0GAI_GOSHI; DELLA protein GAI
TrEMBLA0A0D3LWI10.0A0A0D3LWI1_PRUMU; DELLA
STRINGXP_008229195.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80334121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.10.0RGA-like 2