PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008229231.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB
Protein Properties Length: 238aa    MW: 26763.4 Da    PI: 9.5585
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008229231.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.36.2e-171360148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W+++Ed++l+d++k +G g+W++ ++  g++R++k+c++rw +yl
   XP_008229231.1 13 KGAWSKQEDQKLIDYIKAHGEGCWRSLPKAAGLHRCGKSCRLRWINYL 60
                     79********************************************97 PP
2Myb_DNA-binding52.31.4e-1666110147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg++ ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++
   XP_008229231.1  66 RGNFEQDEEDLIIKLHALLGNR-WSLIAGRLP-GRTDNEVKNYWNSH 110
                      899*******************.*********.***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.9E-24463IPR009057Homeodomain-like
PROSITE profilePS5129417.504860IPR017930Myb domain
SuperFamilySSF466891.8E-2811107IPR009057Homeodomain-like
SMARTSM007173.0E-141262IPR001005SANT/Myb domain
PfamPF002494.3E-151360IPR001005SANT/Myb domain
CDDcd001678.14E-111560No hitNo description
PROSITE profilePS5129426.30561115IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.0E-2664116IPR009057Homeodomain-like
SMARTSM007175.1E-1565113IPR001005SANT/Myb domain
PfamPF002496.0E-1566110IPR001005SANT/Myb domain
CDDcd001671.18E-1068111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MRKPCCEKEG TNKGAWSKQE DQKLIDYIKA HGEGCWRSLP KAAGLHRCGK SCRLRWINYL  60
RPDIKRGNFE QDEEDLIIKL HALLGNRWSL IAGRLPGRTD NEVKNYWNSH IRKKLIKMGI  120
DPNNHRLNQI IPRPNPQSDC VSAAATSSGS MSNISACTKA PIKSSREIDQ RASQATSVLE  180
DETSGSSSRD LNLDLTIAFP NPPLQVGEEM QKNIKGSFTM AREIETNLQH SPTLALFR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-28131157108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008229231.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT1592350.0KT159235.1 Prunus persica R2R3-MYB transcription factor (MYB19) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008229231.11e-178PREDICTED: myb-related protein 308-like
SwissprotP813935e-76MYB08_ANTMA; Myb-related protein 308
TrEMBLM5WTU21e-175M5WTU2_PRUPE; R2R3-MYB transcription factor
STRINGXP_008229231.11e-178(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26434221
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09460.18e-78myb domain protein 6
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]