PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008229554.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family NAC
Protein Properties Length: 187aa    MW: 22018.8 Da    PI: 8.2029
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008229554.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM86.74.4e-27111451128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpk.....kvka....eekewyfFskrdkkyatgkrknratksgyWka 85 
                     +ppG++F P++eel+ +yL++kv+g++++ e++ + ++++y+ +P+++       +  +     ++++yfF++ ++k+++g+r +r++  g+Wk 
  XP_008229554.1  11 VPPGYHFYPSEEELLLYYLRPKVNGEEVPGENHvVFDFNLYSDQPRKIWDhfqttR--QndlkMSNDLYFFTELQTKTTNGSRVSRTAGGGTWKG 103
                     69*************************88876659999**********63244331..2223233477**************************9 PP

             NAM  86 tgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         k++++  +++++g+kk + +   ++ ++e+ +W+mhe++l
  XP_008229554.1 104 EDGGKKIYAPgTDHVIGIKKRFRYE--NKGSAEHGRWLMHEFEL 145
                     9999****9977788********98..44555678*******87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.27E-318166IPR003441NAC domain
PROSITE profilePS5100534.2711166IPR003441NAC domain
PfamPF023657.9E-1912145IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MAEDGYAYDR VPPGYHFYPS EEELLLYYLR PKVNGEEVPG ENHVVFDFNL YSDQPRKIWD  60
HFQTTRQNDL KMSNDLYFFT ELQTKTTNGS RVSRTAGGGT WKGEDGGKKI YAPGTDHVIG  120
IKKRFRYENK GSAEHGRWLM HEFELGQSLI HNRQAKKYVL CLLRKKEEPE KKRKEPEEED  180
RRQVLCL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-151117217171NO APICAL MERISTEM PROTEIN
1ut4_B8e-151117217171NO APICAL MERISTEM PROTEIN
1ut7_A8e-151117217171NO APICAL MERISTEM PROTEIN
1ut7_B8e-151117217171NO APICAL MERISTEM PROTEIN
3swm_A8e-151117220174NAC domain-containing protein 19
3swm_B8e-151117220174NAC domain-containing protein 19
3swm_C8e-151117220174NAC domain-containing protein 19
3swm_D8e-151117220174NAC domain-containing protein 19
3swp_A8e-151117220174NAC domain-containing protein 19
3swp_B8e-151117220174NAC domain-containing protein 19
3swp_C8e-151117220174NAC domain-containing protein 19
3swp_D8e-151117220174NAC domain-containing protein 19
4dul_A8e-151117217171NAC domain-containing protein 19
4dul_B8e-151117217171NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008229554.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008229554.11e-139PREDICTED: NAC domain-containing protein 43-like
TrEMBLM5W7Q21e-116M5W7Q2_PRUPE; Uncharacterized protein
STRINGXP_008229554.11e-138(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55724133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46770.16e-11NAC family protein