PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008230002.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family TALE
Protein Properties Length: 329aa    MW: 36901.7 Da    PI: 7.0189
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008230002.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox277.4e-092552892155
                     HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
        Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                     k +yps++++  LA+++gL+ +q+ +WF N+R ++
  XP_008230002.1 255 KWPYPSEAQKLALAESTGLDLKQINNWFINQRKRH 289
                     569*****************************885 PP
2ELK29.51.7e-10209230122
             ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                     E+K  Ll+KY gyLgsLkqEF+
  XP_008230002.1 209 EIKAKLLHKYTGYLGSLKQEFM 230
                     8999*****************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012554.5E-1868112IPR005540KNOX1
PfamPF037901.2E-2069108IPR005540KNOX1
SMARTSM012564.8E-23118169IPR005541KNOX2
PfamPF037914.5E-21125168IPR005541KNOX2
PROSITE profilePS5121310.214209229IPR005539ELK domain
SMARTSM011881.2E-5209230IPR005539ELK domain
PfamPF037892.6E-6209230IPR005539ELK domain
PROSITE profilePS5007111.904229292IPR001356Homeobox domain
SuperFamilySSF466891.71E-19231307IPR009057Homeodomain-like
SMARTSM003892.4E-11231296IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.6E-27234293IPR009057Homeodomain-like
CDDcd000864.81E-12241293No hitNo description
PfamPF059205.6E-17249288IPR008422Homeobox KN domain
PROSITE patternPS000270267290IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MERGGTNCNN NSGVTYSGLM MGFGNNTSRT GSSKAQFLSL PLMVGCSHPN LQSDHQTTDQ  60
EMMVSCSDRM KAKIMAHPLF PRLLASYVSC QKVGAPPEVV ARLEQACSAA VHNSEAACLG  120
GGDPDPALDQ FMEAYCEMLT KYEEELTKPF KEAMLFLSKI DSQLQALTVH SSSDSASSDD  180
NIAGRSGSPE EVDATKNESC IDPRAEDREI KAKLLHKYTG YLGSLKQEFM KKKKNGKLPK  240
EARHQLLDWW SRHYKWPYPS EAQKLALAES TGLDLKQINN WFINQRKRHW KPSEDIQFAV  300
MDPTHPHHHP HFYMDNNLTF PMNSTSTLL
Functional Description ? help Back to Top
Source Description
UniProtPossible transcription activator involved in early embryonic development. Probably binds to the DNA sequence 5'-TGAC-3'.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008230002.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ2817740.0GQ281774.1 Prunus persica class I KNOX homeobox transcription factor STM-like 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008230002.10.0PREDICTED: homeobox protein knotted-1-like LET6
SwissprotP466081e-111HSBH1_SOYBN; Homeobox protein SBH1
TrEMBLA0A251Q4P90.0A0A251Q4P9_PRUPE; Uncharacterized protein
STRINGXP_008230002.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20393480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62360.11e-106KNOX/ELK homeobox transcription factor
Publications ? help Back to Top
  1. Shu Y, et al.
    GmSBH1, a homeobox transcription factor gene, relates to growth and development and involves in response to high temperature and humidity stress in soybean.
    Plant Cell Rep., 2015. 34(11): p. 1927-37
    [PMID:26205508]