PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008230194.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB
Protein Properties Length: 252aa    MW: 28795.9 Da    PI: 5.9647
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008230194.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.57.3e-141461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd+ l  +++++G  +W++ ++  g  R++k+c++rw +yl
   XP_008230194.1 14 KGAWSPEEDDTLRVYIEEHGHVNWRSLPKFAGISRCGKSCRLRWTNYL 61
                     79******************99**********99************97 PP
2Myb_DNA-binding54.62.5e-1767110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T++Ed+l++++++++G++ W+ Ia++++ gRt++++k++w++
   XP_008230194.1  67 RGNYTQQEDDLILKLHQEFGNK-WSMIAAKLP-GRTDNEIKNHWNT 110
                      899*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.011961IPR017930Myb domain
SuperFamilySSF466891.2E-3011108IPR009057Homeodomain-like
SMARTSM007173.1E-131363IPR001005SANT/Myb domain
PfamPF002492.4E-141461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-221568IPR009057Homeodomain-like
CDDcd001675.07E-101661No hitNo description
PROSITE profilePS5129424.61162116IPR017930Myb domain
SMARTSM007172.9E-1666114IPR001005SANT/Myb domain
PfamPF002492.4E-1567110IPR001005SANT/Myb domain
CDDcd001671.25E-1169110No hitNo description
Gene3DG3DSA:1.10.10.605.5E-2669114IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MVRAPFYDKS GLKKGAWSPE EDDTLRVYIE EHGHVNWRSL PKFAGISRCG KSCRLRWTNY  60
LRPGVKRGNY TQQEDDLILK LHQEFGNKWS MIAAKLPGRT DNEIKNHWNT RFKKLAKQNP  120
TSSQLAKEQP CKHESSPTVT SQNTELGAQS GPKFDASVHQ ILESSPLSPE TFSSDSSSLS  180
SNQASASTTT SWFNESSGDF WTEPYQLYVQ SNYPDNYMRE EEVLSSPSLT FYDMGDMDLF  240
NQVMPTWQEN ID
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C6e-251211425126MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008230194.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008230194.10.0PREDICTED: myb-related protein Myb4-like
TrEMBLA0A314UXP01e-162A0A314UXP0_PRUYE; Myb-related protein Myb4-like
STRINGXP_008230194.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35633186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.16e-55myb domain protein 4