PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008230195.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB
Protein Properties Length: 279aa    MW: 31680.9 Da    PI: 4.8018
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008230195.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.91.8e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g WT+eEd +l+ +v+++G  +W+  +r  g+ R++k+c++rw +yl
   XP_008230195.1 14 KGTWTPEEDRKLIAYVTRYGCWNWRQLPRFAGLSRCGKSCRLRWMNYL 61
                     799*****************99************************97 PP
2Myb_DNA-binding58.81.2e-1867111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg+ ++eE+e ++++++qlG++ W++Ia+ ++ gRt++++k++w++ 
   XP_008230195.1  67 RGNYSQEEEETIIKLHQQLGNR-WSAIAAQLP-GRTDNEIKNHWHTN 111
                      899*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.629961IPR017930Myb domain
SuperFamilySSF466893.0E-3011108IPR009057Homeodomain-like
SMARTSM007171.7E-111363IPR001005SANT/Myb domain
PfamPF002497.2E-141461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.5E-231568IPR009057Homeodomain-like
CDDcd001671.81E-91661No hitNo description
PROSITE profilePS5129425.5562116IPR017930Myb domain
SMARTSM007173.2E-1766114IPR001005SANT/Myb domain
PfamPF002491.3E-1667111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-2669116IPR009057Homeodomain-like
CDDcd001673.82E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MVRTPCRDEN GMKKGTWTPE EDRKLIAYVT RYGCWNWRQL PRFAGLSRCG KSCRLRWMNY  60
LRPNIKRGNY SQEEEETIIK LHQQLGNRWS AIAAQLPGRT DNEIKNHWHT NLKKRMNNKH  120
YNPSSSSSSS SSSSSSVTQT DDQETPNCSG LVELAVDQLT ENATILPNAD ETADHHLQVP  180
QTDHDHLDNI FQLSSPQPSS SEVSSLTADN AAVVLSSVNN DNWVNYVEED NVISSIEAFA  240
DVQFGDDFWT EPFLADTSYI PCGLSTLSMD SEFFYPPFY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-28141177109B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008230195.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008230195.10.0PREDICTED: myb-related protein Myb4-like
TrEMBLA0A314UVH41e-178A0A314UVH4_PRUYE; Transcription factor MYB14
STRINGXP_008230195.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35633186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28110.16e-58myb domain protein 41