PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008230289.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MIKC_MADS
Protein Properties Length: 246aa    MW: 28169.9 Da    PI: 9.2907
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008230289.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF98.82.2e-31959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krienk+nrqvtf+kRrng+lKKA+ELS+LCdaeva+iifs++gklye++s
  XP_008230289.1  9 KRIENKINRQVTFAKRRNGLLKKAYELSILCDAEVALIIFSNRGKLYEFCS 59
                    79***********************************************96 PP
2K-box94.81.4e-3179174499
           K-box   4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                      + ++ +++ ++s+++e+ kLk + e+Lqr+qR+llGe+L++L+ keL+qLe+qLe+slk++Rs+K++++l+q+++lq+ke++l e+n++L+ kl
  XP_008230289.1  79 VEVNKPAKELEQSSYREYLKLKGRFESLQRTQRNLLGEELGPLNTKELEQLERQLESSLKQVRSTKTQYMLDQLSDLQNKEQMLIEANRDLSLKL 173
                     555666777899*******************************************************************************9998 PP

           K-box  99 e 99 
                     +
  XP_008230289.1 174 D 174
                     6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006633.333161IPR002100Transcription factor, MADS-box
SMARTSM004323.2E-41160IPR002100Transcription factor, MADS-box
CDDcd002651.48E-43278No hitNo description
SuperFamilySSF554555.62E-33283IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-32323IPR002100Transcription factor, MADS-box
PfamPF003192.5E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-322338IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-323859IPR002100Transcription factor, MADS-box
PfamPF014865.2E-2689173IPR002487Transcription factor, K-box
PROSITE profilePS5129715.22889179IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009611Biological Processresponse to wounding
GO:0048481Biological Processplant ovule development
GO:0071486Biological Processcellular response to high light intensity
GO:0071492Biological Processcellular response to UV-A
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSILCD AEVALIIFSN RGKLYEFCSS  60
SSSILKTLER YQKCSYGQVE VNKPAKELEQ SSYREYLKLK GRFESLQRTQ RNLLGEELGP  120
LNTKELEQLE RQLESSLKQV RSTKTQYMLD QLSDLQNKEQ MLIEANRDLS LKLDDISSRN  180
QIRQSWEGGN QGGMAYGTQH AQSQGFFQPL DCNPTLQIGY SNVGSEQMSA TTHAQQVNGF  240
IPGWML
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A4e-37761751103Developmental protein SEPALLATA 3
4ox0_B4e-37761751103Developmental protein SEPALLATA 3
4ox0_C4e-37761751103Developmental protein SEPALLATA 3
4ox0_D4e-37761751103Developmental protein SEPALLATA 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008230289.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY9474640.0AY947464.1 Prunus dulcis MADS-box transcription factor (MADS3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008230289.10.0PREDICTED: developmental protein SEPALLATA 1-like isoform X1
SwissprotQ8LLR21e-147MADS2_VITVI; Agamous-like MADS-box protein MADS2
TrEMBLA0A251Q6F51e-179A0A251Q6F5_PRUPE; Uncharacterized protein
TrEMBLQ3KSZ01e-179Q3KSZ0_PRUDU; MADS-box transcription factor
STRINGXP_008230289.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22932178
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02310.11e-120MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]