PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008230383.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family RAV
Protein Properties Length: 314aa    MW: 36281.1 Da    PI: 8.1259
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008230383.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP239.51.4e-122068155
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    s+ykGV   + +grW A+I++      ++r++lg+f  +eeAaka++ a  +++g
  XP_008230383.1 20 SRYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNAEEEAAKAYDIASIRFRG 68
                    78****9888.8*********3.....5*********************999887 PP
2B396.51.7e-30152254198
                     EEEE-..-HHHHTT-EE--HHH.HTT.....---....--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkke..esktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+kv tpsdv++++r+v+pk++ae+h     +  +e  +++ l +ed +g++W+++++y+ +s++yvltkGW +Fvk+++Lk+gD+v F++++ +
  XP_008230383.1 152 FEKVATPSDVGRLNRMVIPKQHAEKHfpshlS--EElcKGVLLNFEDGEGKVWRLRYCYWSSSQSYVLTKGWTRFVKEKKLKAGDVVRFERSRGE 244
                     89*************************99552..44448899************************************************99889 PP

                     EE..EEEEE- CS
              B3  89 efelvvkvfr 98 
                     e+++++  + 
  XP_008230383.1 245 EKKMFIDCRP 254
                     9989888776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.93E-242075No hitNo description
SuperFamilySSF541712.03E-162077IPR016177DNA-binding domain
PfamPF008476.4E-82068IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.4E-192177IPR001471AP2/ERF domain
PROSITE profilePS5103219.7572176IPR001471AP2/ERF domain
SMARTSM003801.8E-242182IPR001471AP2/ERF domain
PRINTSPR003674.1E-52233IPR001471AP2/ERF domain
PRINTSPR003674.1E-54258IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.103.3E-39146256IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.41E-31148254IPR015300DNA-binding pseudobarrel domain
CDDcd100178.45E-29150246No hitNo description
PfamPF023622.4E-28152255IPR003340B3 DNA binding domain
PROSITE profilePS5086314.156152255IPR003340B3 DNA binding domain
SMARTSM010191.4E-24152255IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MDVLNESTSE AANSNKLPSS RYKGVVPQPN GRWGAQIYEK HQRVWLGTFN AEEEAAKAYD  60
IASIRFRGLE TITNFNQNQL KPYMDGDSET LFLQSHSKAE IVDMLRKHSY TNELEMYKLK  120
LFNAGDDDAA RKRIKCHVNL MEGYDHQREW LFEKVATPSD VGRLNRMVIP KQHAEKHFPS  180
HLSEELCKGV LLNFEDGEGK VWRLRYCYWS SSQSYVLTKG WTRFVKEKKL KAGDVVRFER  240
SRGEEKKMFI DCRPRNVEVS GLGEMASRVE VEEPLSRVQE DDGVVRLFGV NIVETCSCIV  300
DNNMRWRLGA RISS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A3e-4714925611118DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Transcriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences (Probable). Functionally redundant with TEM1. {ECO:0000250, ECO:0000269|PubMed:18718758, ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008230383.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008230383.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription repressor RAV2-like
SwissprotP822801e-102RAV2_ARATH; AP2/ERF and B3 domain-containing transcription repressor RAV2
TrEMBLM5XF160.0M5XF16_PRUPE; Uncharacterized protein (Fragment)
STRINGXP_008230383.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF29203274
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.21e-105related to ABI3/VP1 2
Publications ? help Back to Top
  1. Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
    RAV genes: regulation of floral induction and beyond.
    Ann. Bot., 2014. 114(7): p. 1459-70
    [PMID:24812253]
  2. Marín-González E, et al.
    SHORT VEGETATIVE PHASE Up-Regulates TEMPRANILLO2 Floral Repressor at Low Ambient Temperatures.
    Plant Physiol., 2015. 169(2): p. 1214-24
    [PMID:26243615]
  3. Sun YW, et al.
    Attenuation of Histone Methyltransferase KRYPTONITE-mediated transcriptional gene silencing by Geminivirus.
    Sci Rep, 2015. 5: p. 16476
    [PMID:26602265]
  4. Mittal A,Jiang Y,Ritchie GL,Burke JJ,Rock CD
    AtRAV1 and AtRAV2 overexpression in cotton increases fiber length differentially under drought stress and delays flowering.
    Plant Sci., 2015. 241: p. 78-95
    [PMID:26706061]
  5. Matías-Hernández L, et al.
    TEMPRANILLO Reveals the Mesophyll as Crucial for Epidermal Trichome Formation.
    Plant Physiol., 2016. 170(3): p. 1624-39
    [PMID:26802039]
  6. Li P, et al.
    The Arabidopsis UGT87A2, a stress-inducible family 1 glycosyltransferase, is involved in the plant adaptation to abiotic stresses.
    Physiol Plant, 2017. 159(4): p. 416-432
    [PMID:27747895]