PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008230517.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

YABBY

Protein Properties

Length: 192aa MW: 21204.9 Da PI: 8.5901

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008230517.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	232.1	1.4e-71	6	164	5	170
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsse 99 +se+vCyv+CnfCntilavsvP +sl +vvtvrCGhC++llsvn+ + q a + +++l++++ ++e+ ++ +++s++ s+ + XP_008230517.1 6 MASERVCYVHCNFCNTILAVSVPCNSLQNVVTVRCGHCANLLSVNMGASLQSNALAPQ------DPQLQKMHLSSEDSNKSCGSSSSSKCSKFGH 94 579*****************************************999988877776......4556666666666666666666666666666 PP YABBY 100 klsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 +++ e ++ pr+ p irPPekrqrvPsaynrfikeeiqrikasnPdishreafs+aaknWahfP+ihfgl XP_008230517.1 95 PFESVELHDQPRISP-IRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGL 164 778899999999999.9**************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	6.8E-73	7	164	IPR006780	YABBY protein
SuperFamily	SSF47095	1.44E-8	106	157	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	3.9E-5	112	158	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development
GO:0010158	Biological Process	abaxial cell fate specification

Sequence ? help Back to Top
Protein Sequence Length: 192 aa Download sequence Send to blast
MSMDLMASER VCYVHCNFCN TILAVSVPCN SLQNVVTVRC GHCANLLSVN MGASLQSNAL 60 APQDPQLQKM HLSSEDSNKS CGSSSSSKCS KFGHPFESVE LHDQPRISPI RPPEKRQRVP 120 SAYNRFIKEE IQRIKASNPD ISHREAFSTA AKNWAHFPHI HFGLKLDGSK QPKPDQTFAG 180 GDQGTQKSSG FY

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008230517.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF147402	1e-44	EF147402.1 Populus trichocarpa clone WS01230_J05 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008230517.1	1e-143	PREDICTED: putative axial regulator YABBY 2 isoform X1
Swissprot	Q9XFB0	1e-76	YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBL	A0A251NQJ2	1e-120	A0A251NQJ2_PRUPE; Uncharacterized protein
STRING	XP_008230517.1	1e-142	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1124	34	112

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08465.1	5e-73	YABBY family protein

Publications ? help Back to Top
Sacharowski SP, et al. SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development. Plant Cell, 2015. 27(7): p. 1889-906 [PMID:26106148]