PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008230766.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family ZF-HD
Protein Properties Length: 357aa    MW: 38797.5 Da    PI: 7.2306
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008230766.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer108.44.1e-3467123459
     ZF-HD_dimer   4 vrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 
                     v+YkeClkNhAa+lGgha+DGCgEfmps+++  +++++lkCaACgCHRnFHRr++e+
  XP_008230766.1  67 VTYKECLKNHAATLGGHALDGCGEFMPSPTAIpTDPTSLKCAACGCHRNFHRRDPED 123
                     79****************************999********************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257743.0E-2367120IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047702.7E-2867121IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015662.0E-3168120IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.90969120IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.08E-17196271IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.9E-28205271IPR009057Homeodomain-like
TIGRFAMsTIGR015651.4E-23210267IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MDITPSITTT TNNTTSTKSP EADSETPTRI QPAKPLSFSN GVLKRHNPHP HHHHLHHHNI  60
PITPVIVTYK ECLKNHAATL GGHALDGCGE FMPSPTAIPT DPTSLKCAAC GCHRNFHRRD  120
PEDPMPPSTA AATTHVIEYQ PHHRHHPPPP THGGNRSPNS ASPPPISSSY YPSAPHMLLA  180
LSTAHENALG GPNNHHSPQP PIVSPSPNAR KRIRTKFCQE QKDKMYQFAE RVGWKMQKRD  240
EEIVQEFCNE INVDKGVLKV WMHNNKNTFA KRDVINGSGG GLSGGVSRPN ILLEQAHNNG  300
NGNGNGNGNN NNVDDENDEH NDDENNNNSD MQNLNHYQGT DGGAAGHAGT NGSSSSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A1e-192112681875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008230766.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008230766.10.0PREDICTED: zinc-finger homeodomain protein 9-like
SwissprotQ9LXG02e-76ZHD8_ARATH; Zinc-finger homeodomain protein 8
TrEMBLA0A251Q6361e-169A0A251Q636_PRUPE; Uncharacterized protein
STRINGXP_008230766.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19793188
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28920.15e-74homeobox protein 34
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]