PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008230918.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB
Protein Properties Length: 327aa    MW: 36466.9 Da    PI: 9.2256
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008230918.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.38.6e-191562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+ Ed++l+ +v+++G g+W + +++ g+ R++k+c++rw++yl
   XP_008230918.1 15 KGPWTPAEDQKLLAYVQKHGHGNWQSLPQKAGLQRCGKSCRLRWRNYL 62
                     79*********************************************7 PP
2Myb_DNA-binding45.71.5e-1468111146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+++ +Ed  +++++++lG++ W++I ++++ +Rt++++k++w++
   XP_008230918.1  68 RGNFSLQEDRTIIQLHALLGNR-WSAITAHLP-KRTDNEVKNYWHS 111
                      89********************.*********.***********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.1E-25765IPR009057Homeodomain-like
PROSITE profilePS5129423.6541066IPR017930Myb domain
SuperFamilySSF466891.37E-3112109IPR009057Homeodomain-like
SMARTSM007171.2E-141464IPR001005SANT/Myb domain
PfamPF002492.1E-171562IPR001005SANT/Myb domain
CDDcd001671.97E-121762No hitNo description
Gene3DG3DSA:1.10.10.602.0E-2366117IPR009057Homeodomain-like
PROSITE profilePS5129418.61667117IPR017930Myb domain
SMARTSM007171.2E-1367115IPR001005SANT/Myb domain
PfamPF002492.4E-1368111IPR001005SANT/Myb domain
CDDcd001671.32E-970113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MRKSTHCVAS SGMKKGPWTP AEDQKLLAYV QKHGHGNWQS LPQKAGLQRC GKSCRLRWRN  60
YLRPDIRRGN FSLQEDRTII QLHALLGNRW SAITAHLPKR TDNEVKNYWH SRLKKRLALN  120
GYDPVTHKHK RTIFGSANGS TDDPKTGSNL NHIAQWENAR LQAEARFVRD SELHKQAQNL  180
YNNNDISAAS SILLGHSKDF GPTDQLFGQN APQCLDILRA WESILMSNYS KAAGGQDHVN  240
SFGNGLAGGF EPPIISSISS SNGSSLMDFH EPVGQCFDDN YGTNITEPFA AVHHNMGFKN  300
GACLEDFGLW EIIMQGRKDC PISGTSV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-27131175108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtFunctions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269|PubMed:18805951, ECO:0000269|PubMed:21070410, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008230918.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008230918.10.0PREDICTED: transcription factor MYB34-like
SwissprotQ9LE636e-83MY106_ARATH; Transcription factor MYB106
TrEMBLA0A314ZM780.0A0A314ZM78_PRUYE; Transcription factor MYB32-like
STRINGXP_008230918.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1903726
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01140.11e-84myb domain protein 106