PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008230943.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB
Protein Properties Length: 467aa    MW: 52555.9 Da    PI: 7.3868
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008230943.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.93.5e-16253299148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT++Ed llv++v ++G + W+ Ia+++  gR +kqc++rw+++l
   XP_008230943.1 253 KGQWTPQEDRLLVQLVGRFGIKKWSQIAKMLS-GRVGKQCRERWHNHL 299
                      799*****************************.*************97 PP
2Myb_DNA-binding574.6e-18306347245
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      + W++eEd++l++a+kq G++ W+ Ia++++ gRt++ +k++w+
   XP_008230943.1 306 DMWSEEEDKILIEAHKQIGNK-WAEIAKMLP-GRTENTIKNHWN 347
                      67*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129428.409248303IPR017930Myb domain
SuperFamilySSF466896.11E-32250346IPR009057Homeodomain-like
SMARTSM007171.1E-14252301IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-23254303IPR009057Homeodomain-like
PfamPF139211.8E-17256313No hitNo description
CDDcd001674.77E-14256299No hitNo description
PROSITE profilePS5129418.89304354IPR017930Myb domain
SMARTSM007175.4E-15304352IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.0E-21304352IPR009057Homeodomain-like
CDDcd001672.12E-13308350No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010439Biological Processregulation of glucosinolate biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1904095Biological Processnegative regulation of endosperm development
GO:2000692Biological Processnegative regulation of seed maturation
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MELETNLKEL DNFPFHSSLF SDSSTPMKLK PEHPSNTNNG INSLRPQLSS SSPPPPNCKP  60
LFSSLVPHFD PHHQHLHLHH HHHHQPLHGS HLNLNSHSHD DFKTSSDHIN HFSTIEGSSS  120
NPFSGIYYDT NPHDFVAVPL APDGIDFHGA RGSYWGAHHH HHLDGQEIPD DQAQMGPQSC  180
IQLPPLINFG EFGSSSAMAI SLPSDEVTCN SSSSTEIEFC KRLSADDQKK TKRLCMRRPT  240
SSKVLQKKPS IIKGQWTPQE DRLLVQLVGR FGIKKWSQIA KMLSGRVGKQ CRERWHNHLR  300
PDIRKDMWSE EEDKILIEAH KQIGNKWAEI AKMLPGRTEN TIKNHWNATK RKQNSKKKTN  360
KDPNNNINPP ESSLLQVYIR SVVSSSSAFS SSSQMGGSVS NLFNFESYGF GGSFLVDQVT  420
GVEEYRGSSM EAEMPLALEV KSLMQGPDDD HVKKEMDLLE MICQGKL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-452493553110B-MYB
1mse_C3e-452513532104C-Myb DNA-Binding Domain
1msf_C3e-452513532104C-Myb DNA-Binding Domain
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00385DAPTransfer from AT3G27785Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008230943.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008230943.10.0PREDICTED: transcription factor MYB98
TrEMBLM5X7L20.0M5X7L2_PRUPE; Uncharacterized protein (Fragment)
STRINGXP_008230943.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1709548
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.18e-60myb domain protein 98