PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008231061.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

NAC

Protein Properties

Length: 237aa MW: 27188.6 Da PI: 10.0212

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008231061.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	119.3	3.7e-37	15	144	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 +p+G+rFhPtdeelv +yLk+kv++ +l++ ++i+++d+++++Pw Lp + +++ yfF ++ ++++ + ++ra+ gyWk gk+k++++ XP_008231061.1 15 MPVGYRFHPTDEELVIHYLKRKVHAAPLPA-SIIPDFDVFHTHPWGLPGCGGDVREKRYFFYNKINANE-IDDTKRAAGCGYWKPMGKEKQIVDP 107 699*************************.89***********654444456699999888765.67899999***********99 PP NAM 96 .kgelvglkktLvfy...kgrapkgektdWvmheyrl 128 ++e+vg++ktLvf + +++ +kt+W+mhey+l XP_008231061.1 108 eSSEAVGIRKTLVFSqrkRRYHETQTKTRWLMHEYQL 144 67888******54323345667*******97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.45E-42	11	172	IPR003441	NAC domain
PROSITE profile	PS51005	41.868	15	172	IPR003441	NAC domain
Pfam	PF02365	3.3E-24	16	144	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence Send to blast
MEKLPNFVIN GGVKMPVGYR FHPTDEELVI HYLKRKVHAA PLPASIIPDF DVFHTHPWGL 60 PGCGGDVREK RYFFYNKINA NEIDDTKRAA GCGYWKPMGK EKQIVDPESS EAVGIRKTLV 120 FSQRKRRYHE TQTKTRWLMH EYQLLSSQVN PTHTQASKRE PGNWVVYRVF QRKRKPQRSS 180 DIIPQPSNSK RTRTQRLVEV ITPSSSSSCS SDITHLSSNA NRLDHDQEEN SSAAADN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-23	13	178	15	171	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-23	13	178	15	171	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-23	13	178	15	171	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-23	13	178	15	171	NO APICAL MERISTEM PROTEIN
3swm_A	3e-23	13	178	18	174	NAC domain-containing protein 19
3swm_B	3e-23	13	178	18	174	NAC domain-containing protein 19
3swm_C	3e-23	13	178	18	174	NAC domain-containing protein 19
3swm_D	3e-23	13	178	18	174	NAC domain-containing protein 19
3swp_A	3e-23	13	178	18	174	NAC domain-containing protein 19
3swp_B	3e-23	13	178	18	174	NAC domain-containing protein 19
3swp_C	3e-23	13	178	18	174	NAC domain-containing protein 19
3swp_D	3e-23	13	178	18	174	NAC domain-containing protein 19
4dul_A	2e-23	13	178	15	171	NAC domain-containing protein 19
4dul_B	2e-23	13	178	15	171	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008231061.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008231061.1	1e-180	PREDICTED: NAC domain-containing protein 41
TrEMBL	M5X883	1e-164	M5X883_PRUPE; Uncharacterized protein
STRING	XP_008231061.1	1e-180	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF704	34	139

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G14000.1	1e-43	NAC domain containing protein 84