PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008231099.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MIKC_MADS
Protein Properties Length: 214aa    MW: 24275.6 Da    PI: 8.3177
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008231099.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF85.33.7e-27959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    kri++k++rqvtfskRr g++KKA ELSvLC +ev +iifs +g+lye++s
  XP_008231099.1  9 KRIDDKIRRQVTFSKRRSGLIKKARELSVLCSVEVGLIIFSAKGRLYEFCS 59
                    79***********************************************96 PP
2K-box341.2e-1210317528100
           K-box  28 ienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                     +++L++ q  l  +++e+L++ eL qLe+qL++ l++ Rs+K++l+++++  l +kek+lqee+  ++k+++e
  XP_008231099.1 103 NRSLKTIQSELEAQNIENLDVTELTQLEKQLDTLLRQTRSRKTQLMMDSLTALIEKEKQLQEEKLLMEKEIAE 175
                     7889999999999**************************************************9998888875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006630.137161IPR002100Transcription factor, MADS-box
SMARTSM004321.9E-34160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.23E-28275IPR002100Transcription factor, MADS-box
CDDcd002654.85E-36271No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004043.8E-27323IPR002100Transcription factor, MADS-box
PfamPF003191.5E-231057IPR002100Transcription factor, MADS-box
PRINTSPR004043.8E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004043.8E-273859IPR002100Transcription factor, MADS-box
PROSITE profilePS512979.45489179IPR002487Transcription factor, K-box
PfamPF014865.1E-10104173IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MGRGKVQLKR IDDKIRRQVT FSKRRSGLIK KARELSVLCS VEVGLIIFSA KGRLYEFCSG  60
ESLGKVLERY QIHNDEENAA PKSVGGTGKK NPSEWSGLCA GPNRSLKTIQ SELEAQNIEN  120
LDVTELTQLE KQLDTLLRQT RSRKTQLMMD SLTALIEKEK QLQEEKLLME KEIAELKEQK  180
NKEQAEEADQ QSCSANNNNS DDNAPPRQTM LHLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-18175174MEF2C
5f28_B1e-18175174MEF2C
5f28_C1e-18175174MEF2C
5f28_D1e-18175174MEF2C
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008231099.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM2433700.0KM243370.1 Prunus pseudocerasus CAULIFLOWER A-like protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008231099.11e-156PREDICTED: truncated transcription factor CAULIFLOWER A-like
TrEMBLA0A314XPP21e-142A0A314XPP2_PRUYE; Truncated transcription factor CAULIFLOWER A-like
STRINGXP_008231097.11e-138(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1577822
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30260.16e-40AGAMOUS-like 79