PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008231107.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C2H2
Protein Properties Length: 247aa    MW: 28080.8 Da    PI: 9.2711
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008231107.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.80.0001895117223
                     EETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                     +C+ C+++++++ +L  H++  H
  XP_008231107.1  95 SCSVCSRVYPTSRLLSIHLSEsH 117
                     6******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003551.66792IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806992IPR007087Zinc finger, C2H2
SMARTSM003552.394117IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028096117IPR007087Zinc finger, C2H2
SMARTSM003550.04132157IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280134157IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MASMDVEGPQ LGFPHWKPLR RRFGPESPFF ASGNIERELL AKQLALDLTE DERHQLRNMV  60
DEEGRGVFCT IVGCGARLSS LEDFEDHYNA RHTASCSVCS RVYPTSRLLS IHLSESHDSF  120
FQAKVARGYP MYECLVEGCD LKFKNYKSRQ QHLVDKHKFP TSFEFFKKAQ PSKKQRQKNQ  180
RKQAIPKKAD ASCMEVENET IDSLVSAVSK LSTSDSSPSS ISFGRRPTRG LTFVPRAVQR  240
EKKPDST
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1172178KKQRQKN
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008231107.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008231107.10.0PREDICTED: zinc finger protein 511
TrEMBLM5WTR30.0M5WTR3_PRUPE; Uncharacterized protein
STRINGXP_008231107.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97182430
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14140.11e-105zinc ion binding;nucleic acid binding;zinc ion binding