PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008231180.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family Trihelix
Protein Properties Length: 435aa    MW: 48331.8 Da    PI: 5.8156
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008231180.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix80.32.6e-25107189286
        trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     W ++e++ Li +rre++  ++++k++ +lW+++s+kmre+gf rsp++C++kw+nl k++kk +++ k +   +s +++y+++l+
  XP_008231180.1 107 WVQEETRSLIGFRREVDGLFNTSKSNRHLWDQISAKMREKGFDRSPTMCTDKWRNLLKEFKKARHQVKVG--SRSAKMSYYEDLQ 189
                     ********************************************************************98..45568*****997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500908.28199163IPR017877Myb-like domain
SMARTSM007170.0096103165IPR001005SANT/Myb domain
CDDcd122031.68E-27105170No hitNo description
PfamPF138371.3E-18106190No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
MYLSEKARPV DLYKGGGLGG EEESEREMMM EVVVANGSAP PHHHHQNQSE SQHQQQMHQM  60
IVGIGENNSS GGEGEEQELC AATSNSIGSR AAGGGGAGAP KKRAETWVQE ETRSLIGFRR  120
EVDGLFNTSK SNRHLWDQIS AKMREKGFDR SPTMCTDKWR NLLKEFKKAR HQVKVGSRSA  180
KMSYYEDLQD LLRDRTNNNH NAASTDAAAA SAGAYKSPTP PKLESFVRFC DKGLEDSGIP  240
FGPMEATDRS ALNLERQLDH DGDPLAITAA DTVAVSGVPP WNWREGPGNG GEGHSSYCGK  300
IITVKLGEYT RRIGIDGTAD AIKEAIKSAF RIRTKRAFWL EDEDQVVRSL DRDMPLGNYT  360
LHLDEGITIK LCLYDDSDRI VRTEEITLYT EDDFRDFLAR RGLTGLRELS GYRRIDTLDE  420
LQSGAMYQGV RLLGD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2jmw_A4e-43101187186DNA binding protein GT-1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269|PubMed:10437822, ECO:0000269|PubMed:15044016, ECO:0000269|PubMed:7866025}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008231180.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008231180.10.0PREDICTED: trihelix transcription factor GT-4-like
SwissprotQ9FX531e-152TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBLA0A314XQG20.0A0A314XQG2_PRUYE; Trihelix transcription factor GT-4-like
STRINGXP_008231180.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68173248
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13450.11e-148Trihelix family protein
Publications ? help Back to Top
  1. Le Gourrierec J,Li YF,Zhou DX
    Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex.
    Plant J., 1999. 18(6): p. 663-8
    [PMID:10417717]