PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008231577.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

NF-YC

Protein Properties

Length: 293aa MW: 31620.7 Da PI: 4.6008

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008231577.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	41	4.2e-13	1	69	30	98
NF-YC 30 lkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++adedv +i+ +Pvl+ska elf+ +l r++ + + +t++ ++ +v++ ++fdfl div r XP_008231577.1 1 MQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNAVHLKHCVQSYNVFDFLRDIVSR 69 899***************************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	8.8E-20	1	70	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	7.6E-19	1	69	IPR009072	Histone-fold
Pfam	PF00808	2.8E-12	1	54	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005829	Cellular Component	cytosol
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 293 aa Download sequence Send to blast
MQADEDVGKI ALAVPVLVSK ALELFLQDLC DRTYEITLQR GAKTMNAVHL KHCVQSYNVF 60 DFLRDIVSRV PDYGHGHSDA AGEDRAISKR RKPPGDECID SDEELKRSKM LEVNHGSSSG 120 RGRGRGRGRG RGRGRASERE TLHHETESEP CTSLQHTTKP NPNPGMVVDD ASESKEEMKE 180 NAVIPDEADP AVRNFDLNAD VIENEDTKAA VTAAQAATAA QASSTAAQAA ATASQAAATA 240 APTSSAGPTS EIKHEEYPGW SLSDVDKMAI DPLQLAHLSG RIDEDEEDYD EEG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_A	2e-14	1	55	21	75	Transcription Regulator NC2 alpha chain
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	124	134	RGRGRGRGRGR
2	126	135	RGRGRGRGRA

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008231577.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008231577.1	0.0	PREDICTED: dr1-associated corepressor homolog
TrEMBL	M5XLH5	1e-156	M5XLH5_PRUPE; Uncharacterized protein
STRING	XP_008231577.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1728	34	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	4e-65	nuclear factor Y, subunit C11