PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008231884.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

FAR1

Protein Properties

Length: 857aa MW: 97138.5 Da PI: 6.6202

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008231884.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	43.4	1.1e-13	64	138	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 Y++Y+++vGFs+ + + +++k +g i++ +f Cs+e +++++ ++ C+a+l+++++ + w+ tk++++HnH+++ XP_008231884.1 64 LYDAYSRHVGFSTHVGQFSRTKPDGPIVTWDFACSREVFKRKNVES--------------CNAMLRIERKGANSWVATKFVEDHNHSMV 138 69************************************999877..............************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.7E-11	64	138	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	7.7E-30	270	362	IPR018289	MULE transposase domain
Pfam	PF04434	1.2E-11	547	581	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	11.276	547	583	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.7E-8	558	585	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 857 aa Download sequence Send to blast
MDTEVVVDVE GENMEHHMEE NTEPGEKQNV NQNFTGREIS IQDDGNTKPH VGMEFESEEA 60 AKTLYDAYSR HVGFSTHVGQ FSRTKPDGPI VTWDFACSRE VFKRKNVESC NAMLRIERKG 120 ANSWVATKFV EDHNHSMVSP NKVHYLRPRR HFAGATKNAA ETLDATTDVY FATEGNHVSY 180 EPNRGGRSVS PVEPNHPARN LGPVNYIRPS SRKRTLGRDA QNLLNYFKKM QAENPGFYYA 240 IQLDDENRMT NVFWTDARSR TAYNYFGDAV IFDTMYRPNQ YQVPFAPFTG VNHHGQMVLF 300 GCALLLDESE SSFTWLFRTW LSAMNDKPPV SITTDQDRAI QVAVAQVFTQ TRHCICKWHI 360 LREGQERLAH TYLAHPSLYG ELYSCINFSE TIEDFESSWA SLLERYDLLR NDWLQAVYNA 420 RKQWAPVYFR GTFFAAIFSN QGVSSFFDGY VNQQTSIPLF FKQYERALEL SLEKEIEADY 480 DTMCTTPVLK TPSPMEQQAA NLYTKKVFAK FQEELVETFV YTANKIEGDG LVSKYRVAKY 540 EHDDKAYIVT LNVSEMKSSC SCQMFEYSGI LCRHILTVFT VTNVLTLPTH YILKRWTRNA 600 KSGVGLDEQS SDNQGIETLN MRFNNLCREA IKYAEEGAIA VETYNAAMSA LREGGKKISV 660 VKKNVAKVTP PSSQASGNIQ EDNMKKSPLP LGEMAPSLWP WQEALPHRFN LNDGGVPVAD 720 LNQPSMAPVS IHPDGAHPDN TVVLTCFKSM AWIIENKNST SAGKVAVINL KLQDYGKNPA 780 GETEVQFRLT RVTLEPMLRS MAYISQQLSA PANRVAVINL KLQDTKTTSG ETEVKFQVSR 840 DTLGSMLKSM AYIREQL

Sequence ? help Back to Top

Protein Sequence Length: 857 aa Download sequence Send to blast

MDTEVVVDVE GENMEHHMEE NTEPGEKQNV NQNFTGREIS IQDDGNTKPH VGMEFESEEA  60
AKTLYDAYSR HVGFSTHVGQ FSRTKPDGPI VTWDFACSRE VFKRKNVESC NAMLRIERKG  120
ANSWVATKFV EDHNHSMVSP NKVHYLRPRR HFAGATKNAA ETLDATTDVY FATEGNHVSY  180
EPNRGGRSVS PVEPNHPARN LGPVNYIRPS SRKRTLGRDA QNLLNYFKKM QAENPGFYYA  240
IQLDDENRMT NVFWTDARSR TAYNYFGDAV IFDTMYRPNQ YQVPFAPFTG VNHHGQMVLF  300
GCALLLDESE SSFTWLFRTW LSAMNDKPPV SITTDQDRAI QVAVAQVFTQ TRHCICKWHI  360
LREGQERLAH TYLAHPSLYG ELYSCINFSE TIEDFESSWA SLLERYDLLR NDWLQAVYNA  420
RKQWAPVYFR GTFFAAIFSN QGVSSFFDGY VNQQTSIPLF FKQYERALEL SLEKEIEADY  480
DTMCTTPVLK TPSPMEQQAA NLYTKKVFAK FQEELVETFV YTANKIEGDG LVSKYRVAKY  540
EHDDKAYIVT LNVSEMKSSC SCQMFEYSGI LCRHILTVFT VTNVLTLPTH YILKRWTRNA  600
KSGVGLDEQS SDNQGIETLN MRFNNLCREA IKYAEEGAIA VETYNAAMSA LREGGKKISV  660
VKKNVAKVTP PSSQASGNIQ EDNMKKSPLP LGEMAPSLWP WQEALPHRFN LNDGGVPVAD  720
LNQPSMAPVS IHPDGAHPDN TVVLTCFKSM AWIIENKNST SAGKVAVINL KLQDYGKNPA  780
GETEVQFRLT RVTLEPMLRS MAYISQQLSA PANRVAVINL KLQDTKTTSG ETEVKFQVSR  840
DTLGSMLKSM AYIREQL

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008231884.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008231884.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 3-like
Refseq	XP_008231885.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 3-like
Swissprot	Q9ZVC9	0.0	FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBL	M5X6W3	0.0	M5X6W3_PRUPE; Uncharacterized protein
STRING	XP_008231884.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27110.2	0.0	FAR1-related sequence 3

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]