PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008232178.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

Protein Properties

Length: 233aa MW: 26141.3 Da PI: 7.9452

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008232178.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	37.3	4.9e-12	118	206	1	96
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE.E-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk.ldgrsefelvv 94 f+ vlt+ + + +lv+p +f ++ +s t+ + +g+ We+ + ++s++ l +Wk F+ +n+Lk+gD +vF+ l+ s+++lv+ XP_008232178.1 118 FDVVLTKTNIEHLYQLVVPGRFSATLP---SCS-IPTVLTFRGKNWEMIY--HGSSSHKRLD-NWKAFAIDNNLKVGDACVFEqLEC-SSTRLVF 204 556677777777789999999987663...344.4577889*******..8888877787.******************5444.5555554 PP EE CS B3 95 kv 96 +v XP_008232178.1 205 RV 206 43 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	5.0E-14	115	207	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	2.75E-16	115	207	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.07E-16	116	210	No hit	No description
Pfam	PF02362	6.7E-10	118	205	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	10.433	118	212	IPR003340	B3 DNA binding domain
SMART	SM01019	0.0018	118	212	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 233 aa Download sequence Send to blast
MIRVHCWRCV GGRRFSLCFL VFISSVFLSD VAFECCRSSC ASSFFSSHGF SSKGFLGFVK 60 KGTKIEGKRA GVINIGTPTL LINRLMKGEP QMGDLLTSNP VIELEGDEFW PLSWKPFFDV 120 VLTKTNIEHL YQLVVPGRFS ATLPSCSIPT VLTFRGKNWE MIYHGSSSHK RLDNWKAFAI 180 DNNLKVGDAC VFEQLECSST RLVFRVQILR GDIPSEFLDK LDGDNVDAPI VLE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008232178.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008232178.1	1e-172	PREDICTED: B3 domain-containing protein Os04g0386900-like isoform X1
TrEMBL	M5X1G4	1e-96	M5X1G4_PRUPE; Uncharacterized protein
STRING	XP_008232178.1	1e-171	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9722	26	40