PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008232471.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family ERF
Protein Properties Length: 218aa    MW: 23789.3 Da    PI: 7.1287
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008232471.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.58e-19110159355
             AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     y+GVr+++ +g+++AeIrdp +ng  +r +lg++ tae+Aa a+++a+ k++g
  XP_008232471.1 110 YRGVRQRP-WGKYAAEIRDPAKNG--ARMWLGTYETAEDAALAYDRAAFKIRG 159
                     9*******.***********9987..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.33E-30108169No hitNo description
SMARTSM003804.6E-39109173IPR001471AP2/ERF domain
PROSITE profilePS5103224.236109167IPR001471AP2/ERF domain
SuperFamilySSF541712.48E-23109168IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.7E-32109168IPR001471AP2/ERF domain
PfamPF008471.0E-12110159IPR001471AP2/ERF domain
PRINTSPR003671.1E-13110121IPR001471AP2/ERF domain
PRINTSPR003671.1E-13149169IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MLGDEKSSLE SDFALLETIH QHLLDDNYFH GTHMASLFPN IPPAVEDLGK LSIVVPGESS  60
ESSSWSAPNQ NGVAEPAPAT WADTTEVKDN VQPKLAARET HAPPRWRQNY RGVRQRPWGK  120
YAAEIRDPAK NGARMWLGTY ETAEDAALAY DRAAFKIRGS KALLNFPHLI GSADDACDRA  180
RVTSTRRYRE CCDSLASSSD GGSAKRRRSS GVGSVGSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-33108174470ATERF1
3gcc_A1e-33108174470ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008232471.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008232471.11e-162PREDICTED: ethylene-responsive transcription factor 13-like
TrEMBLM5W7J01e-132M5W7J0_PRUPE; Uncharacterized protein
STRINGXP_008232471.11e-161(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51233157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.11e-29ethylene-responsive element binding factor 13