PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008232700.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family GRF
Protein Properties Length: 443aa    MW: 47867.6 Da    PI: 9.8289
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008232700.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC70.91.5e-22111156146
             WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskees 46 
                     d epgrCrRtDGKkWRC ++v++++k+C+ H+hrgr+rsrk++e+s
  XP_008232700.1 111 DHEPGRCRRTDGKKWRCNKNVVPDQKYCQQHMHRGRQRSRKPVENS 156
                     679***************************************9985 PP
2WRC63.92.3e-20323364243
             WRC   2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrksk 43 
                      epgrCrRtDGKkWRC+r+vl+ +k+C  H+hrg +r+ k +
  XP_008232700.1 323 LEPGRCRRTDGKKWRCRRDVLPHQKYCGQHIHRGAKRQMKDF 364
                     59************************************9976 PP
3QLQ56.86.6e-204680337
             QLQ  3 FTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                    +Ta+Ql++L++Q+l+yK++aan+PvP +L+++i+k
  XP_008232700.1 46 LTASQLHELEQQALIYKHFAANLPVPFHLVLPIWK 80
                    7********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009514.3E-114480IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166622.14580IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088803.8E-134679IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166723.545111155IPR014977WRC domain
PfamPF088791.5E-19113154IPR014977WRC domain
PROSITE profilePS5166721.09322366IPR014977WRC domain
PfamPF088793.9E-17324363IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MTMEEEGGGK VKLGLGIGVD CYGDDHNGTE EVVVGKKKKK YGGGGLTASQ LHELEQQALI  60
YKHFAANLPV PFHLVLPIWK SVAASFGSSN AAAINRQYPS WFSATGFDYR DHEPGRCRRT  120
DGKKWRCNKN VVPDQKYCQQ HMHRGRQRSR KPVENSEVAS PSSTKTPKNS EGELGNSKTN  180
LQISTPKGLQ LMAQSYNYVS VSQGTTMASS GYHECKKNVR PVTTTSIANI PANRSARTNP  240
AAVATTTIAG PTTATNSSTN ENSLNIGVKY NSSNHAGGNC MIRGSSMNVV NVSPGLGFSP  300
KSVLQALLGC NGLYFDNGSG VELEPGRCRR TDGKKWRCRR DVLPHQKYCG QHIHRGAKRQ  360
MKDFQPVAVP YSSAAAMNTA RLSQTTAICR KTNCAIPNTN LSISIPANPP PGRNDERSNS  420
SSDSDTTLTD TSLTACDSSY VSS
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008232700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008232700.10.0PREDICTED: growth-regulating factor 9 isoform X2
TrEMBLA0A251QG680.0A0A251QG68_PRUPE; Uncharacterized protein
STRINGXP_008232696.10.0(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37740.13e-29growth-regulating factor 2