PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008233025.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB_related
Protein Properties Length: 694aa    MW: 78383.4 Da    PI: 6.1943
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008233025.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.53.2e-08590638247
                      SSS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqky 47 
                      ++WT+eE+++++d vk  ++      W+ I + ++ ++++ +++s+++++
   XP_008233025.1 590 LSWTAEEEKKFKDIVKSNPPSlgitFWDQIFKSFP-KKSRRELVSYYFNV 638
                      58*****************88**************.9**********996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010148.5E-839131No hitNo description
PROSITE profilePS5101116.33942135IPR001606ARID DNA-binding domain
SMARTSM005017.0E-1143136IPR001606ARID DNA-binding domain
SuperFamilySSF467744.19E-1545139IPR001606ARID DNA-binding domain
PfamPF013888.3E-962128IPR001606ARID DNA-binding domain
Gene3DG3DSA:1.10.150.601.0E-1163137IPR001606ARID DNA-binding domain
SMARTSM011892.0E-6492543IPR000949ELM2 domain
SMARTSM007170.0029588641IPR001005SANT/Myb domain
CDDcd001671.01E-5591639No hitNo description
PfamPF002497.1E-6591638IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 694 aa     Download sequence    Send to blast
MVADGSALDC AKTPKKNETD GFSVDLEPQS EAPERCVLDV PHKLRCWFDQ LLGVFLKEIS  60
AQGLLRPLPP MIGNGQRVDL LKLFWVVRKR GGFDTISKIR VWDSVAKECG LGWGLGWAVK  120
LVYVKYLHLL ERVIENKALE WSVDISGLDL TEQFMDLEDK LTKVFPEISD QKVKDGGYPH  180
VELSPKNFKD SNEVGSEVAE SDRLKKSVVS EAFLDLDSRR DAGNFCNGDV PLSGGAMKCT  240
VNLMNKNLDL TNSMEDVGKV CDNGEVSEVG ESGRGKKYND CDEAVIFLDP SPGEVSSFRK  300
RKRGPSCGSE VGESRRGKKY NDISNEDAVI LDPSTDEEAN SFWKRKQESL CGMLNWVRVI  360
AKDPCDPAVG SLPERSKWKS FGNEENWMQV LCAREAIFVK KHADSGAEQS NWQKNQRMHP  420
SLYDDHFSSS YNLRERLRLE KKLLSGGTMP QSRTGSESSS PSYSPDMAGM EDQLLGTSDF  480
TGVLDRYPPS HIPLGSNYQA HLPEWTGEAS ESELKWLGSR FWPLEKPEHR YLIERDPIGK  540
GRQESCGCQV SGSIECVRFH ISEKRLRVKL ELGPAFYHWE FNQMGEEVGL SWTAEEEKKF  600
KDIVKSNPPS LGITFWDQIF KSFPKKSRRE LVSYYFNVFL LHRRGYQNRF TPNNIDSDDE  660
GLESGSVTNG FGDEERKPSK SILKSPHKPH AKCR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008233025.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008233025.10.0PREDICTED: AT-rich interactive domain-containing protein 1 isoform X2
RefseqXP_016650277.10.0PREDICTED: AT-rich interactive domain-containing protein 1 isoform X1
TrEMBLA0A251QH940.0A0A251QH94_PRUPE; Uncharacterized protein
STRINGXP_008233024.10.0(Prunus mume)