PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008233113.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family Dof
Protein Properties Length: 262aa    MW: 28618.5 Da    PI: 8.6626
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008233113.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof1261.2e-392282262
          zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                    ++++l+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknkks+
  XP_008233113.1 22 PQEQLNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGTLRNVPVGGGSRKNKKST 82
                    6899******************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074783.0E-241774IPR003851Zinc finger, Dof-type
PfamPF027019.7E-342480IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.0962680IPR003851Zinc finger, Dof-type
PROSITE patternPS0136102864IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009639Biological Processresponse to red or far red light
GO:0009845Biological Processseed germination
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MEDHEMGSNA CPRSALEKRA RPQEQLNCPR CNSTNTKFCY YNNYSLTQPR YFCKTCRRYW  60
TEGGTLRNVP VGGGSRKNKK STSSSASSSA SLLSKNNIPD LNPPSSLSHF SAHQNPRSTH  120
EGQDLNLAFN AMEHYQQNPA AGASTSSSAP LSAMELLRTG IASRGVNSFI PTQNMADHSN  180
TLYASSPGFS LQEFKPNLGF CVDGLGNRYG DHEINGGRLL FPFGDLKQIS SSTAHHELDH  240
HQNKGQGNPT GYWNGLLGGG SW
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor specifically involved in the maternal control of seed germination. Regulates transcription by binding to a 5'-AA[AG]G-3' consensus core sequence. May ensure the inactivity of a component that would be activated to trigger germination as a consequence of red light perception.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008233113.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1368732e-50BT136873.1 Lotus japonicus clone JCVI-FLLj-14C11 unknown mRNA.
GenBankBT1443332e-50BT144333.1 Lotus japonicus clone JCVI-FLLj-13E12 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008233111.10.0PREDICTED: dof zinc finger protein DOF2.5 isoform X1
RefseqXP_008233113.10.0PREDICTED: dof zinc finger protein DOF2.5 isoform X2
RefseqXP_008233114.10.0PREDICTED: dof zinc finger protein DOF2.5 isoform X2
SwissprotQ433854e-62DOF37_ARATH; Dof zinc finger protein DOF3.7
TrEMBLA0A314YSP40.0A0A314YSP4_PRUYE; Dof zinc finger protein DOF2.5 isoform X1
STRINGXP_008233111.10.0(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61850.32e-55Dof family protein