PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008233120.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family LBD
Protein Properties Length: 154aa    MW: 17679.4 Da    PI: 6.867
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008233120.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260122.81.7e-38151141100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +CaaC++lrr+C ++C lapyfp e+ +kfa vhk+FGasnv+k+++ ++e++reda+++lv+eA+ar+rdPvyG++g i++lq+ +e+l+++l+
  XP_008233120.1  15 PCAACRMLRRRCDRNCSLAPYFPGEEIEKFAGVHKVFGASNVIKMIQMVEETRREDAVKALVFEARARLRDPVYGSTGAIFHLQKMIEELRSQLE 109
                     7*********************************************************************************************9 PP

          DUF260  96 llkee 100
                     +++++
  XP_008233120.1 110 SIRSQ 114
                     99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.26514115IPR004883Lateral organ boundaries, LOB
PfamPF031952.6E-3815112IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MDTQVVPVHS RVHQPCAACR MLRRRCDRNC SLAPYFPGEE IEKFAGVHKV FGASNVIKMI  60
QMVEETRRED AVKALVFEAR ARLRDPVYGS TGAIFHLQKM IEELRSQLES IRSQVLELQQ  120
HRDQLLGILM NNVHCLEDDL FSTMQHDPMF GGDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-3551161112LOB family transfactor Ramosa2.1
5ly0_B3e-3551161112LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008233120.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008233120.11e-112PREDICTED: LOB domain-containing protein 1-like
SwissprotQ9LQR03e-41LBD1_ARATH; LOB domain-containing protein 1
TrEMBLA0A251QIE21e-108A0A251QIE2_PRUPE; Uncharacterized protein
STRINGXP_008233120.11e-111(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF140681921
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.11e-43LOB domain-containing protein 1